Table 1 Summary of Illumina sequencing and assembly of P. notoginseng
| Â | Leaves | Roots | Flowers | Three tissues together |
|---|---|---|---|---|
Number of HQ reads | 65,041,040 | 65,258,974 | 68,125,310 | 198,425,324 |
Length of HQ reads (bp) | 5,853,693,600 | 5,873,307,660 | 6,131,277,900 | 17,858,279,160 |
Number of contigs | 167,954 | 140,265 | 184,389 | 205,000 |
Length of contigs (bp) | 56,302,711 | 48,125,902 | 60,389,472 | 160,205,000 |
Average length of contigs (bp) | 335 | 343 | 328 | 781 |
N50 of contigs (bp) | 537 | 606 | 539 | 1,218 |
Number of unigene* | 128,665 | 94,258 | 124,888 | 107,340 |
Length of unigene (bp) | 76,176,975 | 60,684,037 | 92,995,924 | 111,620,756 |
Average length of unigene (bp) | 592 | 644 | 745 | 1,039 |
N50 of unigene (bp) | 912 | 1,025 | 1,232 | 1,526 |
Number of clusters | 50,984 | 37,727 | 54,977 | 76,938 |
Number of singletons | 77,681 | 56,531 | 69,911 | 30,402 |