Figure 5

Comparative functional potential across 18 Pseudomonas strains. (A) Hierarchical cluster tree based on the PCA analysis of 131 metabolic pathways reconstructed in strain RL and its 17 reference genomes. Heatmap showing family level reconstruction of top 50 metabolic pathways among 18 Pseudomonas genomes in this study (percentage cut-off = 0.8%, variance cut-off = 0.6%). (B) Whole genome synteny plot of Pseudomonas sp. RL and its 17 phylogenetic neighbors (Table 2). A window size of 5 kb was used. Numbers 1–17 are labeled according to the legend provided on the right corner. Colored blocks (red/green) for each genome’s base represents their orientation; green = positive, red = negative. Connecting arcs are drawn in grey color.