From: Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite
Genome | Genome size (in bp) | %G + C | rRNA | tRNA | Presence of integron associated integrase | No. of annotated proteins | HGT proteins | Orthologous proteins | Habitat and accession numbers for genome sequences | ||
---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | 5S | 16S | 23S |  |  |  |  |  |  |
Pseudomonas sp. RL | 3,813,159 | 65 | 1 | 2 | 3 | 39 | Present | 3,499 | 294 | * | HCH dumpsite, India (JBOY00000000) |
P. aeruginosa 19BR | 6,742,964 | 66 | 4 | 4 | 4 | 74 | Present (99%, E = 0.0) | 6,163 | 592 | 817 | MDR strain (clinical) (NZ_AFXJ00000000.1) |
P. aeruginosa 213BR | 6,719,211 | 66 | 4 | 4 | 4 | 74 | Present (99%, E = 0.0) | 6,148 | 129 | 815 | MDR strain (clinical) (NZ_AFXK00000000) |
P. aeruginosa 9BR | 6,849,861 | 66 | 4 | 4 | 4 | 74 | Present (99%, E = 0.0) | 6,296 | 603 | 817 | MDR strain (clinical) (NZ_AFXI00000000.1) |
P. aeruginosa DK2 | 6,402,658 | 66 | 4 | 4 | 4 | 76 | Absent | 5,883 | 182 | 815 | Cystic fibrosis patient (clinical) (NC_ 018080.1) |
P. aeruginosa MTB-1 | 6,580,038 | 66 | 4 | 4 | 4 | 63 | Absent | 6,095 | 223 | 810 | HCH contaminated soil, Japan (NC_023019.1) |
P. stutzeri ATCC 14405 | 4,525,589 | 61 | 1 | 1 | 1 | 53 | Absent | 4,124 | 363 | 851 | Polluted marine isolate, denitrifying bacterium (NZ_AGSL00000000.1) |
P. stutzeri CCUG 29243 | 4,709,064 | 63 | 4 | 4 | 4 | 64 | Absent | 4,300 | 284 | 787 | Polluted marine isolate, naphthalene degrading (NC_018028.1) |
P. stutzeri XLDN-R | 4,695,416 | 64 | 2 | 2 | 2 | 64 | Absent | 4,336 | 401 | 836 | Soil, carbazole degrading (NZ_AKYE00000000.1) |
P. stutzeri T13 | 4,648,939 | 64 | 1 | 1 | 1 | 52 | Present (99%, E = 0.0) | 4,361 | 397 | 827 | Sludge (NZ_ALJB01000000.1) |
P. stutzeri A1501 | 4,567,418 | 64 | 4 | 4 | 4 | 66 | Absent | 4,217 | 476 | 827 | Rhizoshphere (NC_009434.1) |
P. mendocina ymp | 5,072,807 | 65 | 4 | 4 | 4 | 71 | Absent | 4,594 | 424 | 778 | Yucca mountain sediment, high level nuclear respository (NC_009439.1) |
Pseudomonas mendocina DLHK | 5,072,093 | 64.7 | 1 | 1 | 1 | 53 | Absent | 4,621 | 467 | 598 | Bioreactor, denitrifying bacteria (NZ_ALKM00000000.1) |
Pseudomonas mendocina NK-01 | 5,434,353 | 62.5 | 4 | 4 | 4 | 65 | Absent | 4,958 | 345 | 641 | Farmland soil, China (NC_015410.1) |
Pseudomonas psychrotolerans L19 | 5,100,236 | 65.7 | 1 | 1 | 1 | 57 | Absent | 4,759 | 387 | 781 | 50 percent copper alloy coin (NZ_AHBD00000000.1) |
Pseudomonas luteola XLDN4-9 | 4,626,799 | 54.2 | Not found | 1 | 1 | 46 | Absent | 4,299 | 266 | 643 | Soil (NZ_ALAT00000000.1) |
Pseudomonas denitrificans ATCC 13867 | 5,696,307 | 65.2 | 6 | 5 | 5 | 63 | Absent | 5,056 | 103 | 792 | Not found (NC_020829.1) |
Pseudomonas sp. TKP | 7,012,672 | 61 | 6 | 5 | 5 | 68 | Absent | 6,314 | 314 | 814 | HCH contaminated soil, Japan (NC_023064.1) |