Skip to main content

Table 2 General genome features of Pseudomonas sp. RL and its 17 reference genotypes

From: Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite

Genome

Genome size (in bp)

%G + C

rRNA

tRNA

Presence of integron associated integrase

No. of annotated proteins

HGT proteins

Orthologous proteins

Habitat and accession numbers for genome sequences

   

5S

16S

23S

      

Pseudomonas sp. RL

3,813,159

65

1

2

3

39

Present

3,499

294

*

HCH dumpsite, India (JBOY00000000)

P. aeruginosa 19BR

6,742,964

66

4

4

4

74

Present (99%, E = 0.0)

6,163

592

817

MDR strain (clinical) (NZ_AFXJ00000000.1)

P. aeruginosa 213BR

6,719,211

66

4

4

4

74

Present (99%, E = 0.0)

6,148

129

815

MDR strain (clinical) (NZ_AFXK00000000)

P. aeruginosa 9BR

6,849,861

66

4

4

4

74

Present (99%, E = 0.0)

6,296

603

817

MDR strain (clinical) (NZ_AFXI00000000.1)

P. aeruginosa DK2

6,402,658

66

4

4

4

76

Absent

5,883

182

815

Cystic fibrosis patient (clinical) (NC_ 018080.1)

P. aeruginosa MTB-1

6,580,038

66

4

4

4

63

Absent

6,095

223

810

HCH contaminated soil, Japan (NC_023019.1)

P. stutzeri ATCC 14405

4,525,589

61

1

1

1

53

Absent

4,124

363

851

Polluted marine isolate, denitrifying bacterium (NZ_AGSL00000000.1)

P. stutzeri CCUG 29243

4,709,064

63

4

4

4

64

Absent

4,300

284

787

Polluted marine isolate, naphthalene degrading (NC_018028.1)

P. stutzeri XLDN-R

4,695,416

64

2

2

2

64

Absent

4,336

401

836

Soil, carbazole degrading (NZ_AKYE00000000.1)

P. stutzeri T13

4,648,939

64

1

1

1

52

Present (99%, E = 0.0)

4,361

397

827

Sludge (NZ_ALJB01000000.1)

P. stutzeri A1501

4,567,418

64

4

4

4

66

Absent

4,217

476

827

Rhizoshphere (NC_009434.1)

P. mendocina ymp

5,072,807

65

4

4

4

71

Absent

4,594

424

778

Yucca mountain sediment, high level nuclear respository (NC_009439.1)

Pseudomonas mendocina DLHK

5,072,093

64.7

1

1

1

53

Absent

4,621

467

598

Bioreactor, denitrifying bacteria (NZ_ALKM00000000.1)

Pseudomonas mendocina NK-01

5,434,353

62.5

4

4

4

65

Absent

4,958

345

641

Farmland soil, China (NC_015410.1)

Pseudomonas psychrotolerans L19

5,100,236

65.7

1

1

1

57

Absent

4,759

387

781

50 percent copper alloy coin (NZ_AHBD00000000.1)

Pseudomonas luteola XLDN4-9

4,626,799

54.2

Not found

1

1

46

Absent

4,299

266

643

Soil (NZ_ALAT00000000.1)

Pseudomonas denitrificans ATCC 13867

5,696,307

65.2

6

5

5

63

Absent

5,056

103

792

Not found (NC_020829.1)

Pseudomonas sp. TKP

7,012,672

61

6

5

5

68

Absent

6,314

314

814

HCH contaminated soil, Japan (NC_023064.1)

  1. Values in cells with *were not determined as orthologous protein determination was done with respect to Pseudomonas sp. RL.