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Table 1 Selected GO Slim enrichment in the different libraries and their relevant target genes

From: An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress

 

L1

L2

L3

L4

L5

L6

L7

L8

L9

L10

All

GO Slim description

Relevant associated targets

CC

  

++

        

Nucleus

CBFIVb-B20, MIKC-type MADS-box transcription factor, Auxin-responsive protein, Homeobox-leucine zipper protein, Histones, E3 ubiquitin-protein ligase

M F

  

+

 

++

  

+

++

++

 

DNA binding

DEAD-box ATP-dependent RNA helicase, Homeobox-leucine zipper proteins, Histones

    

+++

      

Catalytic

Gibberellin 20 oxidase , Lipoxygenase, Glutathione peroxidase, Superoxide dismutase, Fructose-bisphosphate aldolase, Alcohol dehydrogenase, NADP-malic enzyme

   

++

  

++

    

Transferase

Caffeic acid 3-O-methyltransferase, Tricetin 3',4',5'-O-trimethyltransferase, Serine/threonine-protein kinase, Glutathione-S-transferase

+++

+++

 

+++

 

+++

+++

   

+++

Lipid binding

Non-specific lipid-transfer protein, Homeobox-leucine zipper proteins

++

++

  

++

  

+++

+++

++

+++

Protein binding

Histones, WCOR719, DNA-directed RNA polymerases, MIKC-type MADS-box transcription factors, Serine/threonine-protein kinase, Cullin-1

BP

+

+

         

Transport

Sodium/hydrogen exchanger, Triose phosphate translocator, Protein transport protein, Non-specific lipid-transfer protein, Sucrose transporters

++

 

+++

++

+

+

++

++

++

++

 

Resp. to endogenous stimulus

Auxin-responsive protein, Homeobox-leucine zipper protein, Myo-inositol 1-phosphate synthase

  

++

   

+

    

Multicellular organismal dev.

Ubiquitin-like-specific protease, MIKC-type MADS-box transcription factors, Homeobox-leucine zipper protein

 

++

   

+

    

++

Flower dev.

DL related protein, Ubiquitin-like-specific protease

        

++

  

DNA metabolic process

Replication factor C, Histones, BARE-1 polyprotein

    

+++

     

++

Sec. metabolic process

Phenylalanine ammonia-lyase, Tricetin 3',4',5'-O-trimethyltransferase

  1. The enrichment is presented in four different symbols (“+++” for high (P-value < 10−5), “++” for medium (P-value < 10−3), “+” for low (P-value < 0.05) and “no symbol” for no enrichment (P-value ≥ 0.05). CC, cell component, MF, molecular function, BP, biological process. For details about the libraries and investigated conditions see Additional file 1 and Method S1; and about GO Slim terms classification and associated target genes, see Additional file 3: Figures S4a-6a.