Table 1 Mapping statistics for quality filtered reads generated for embryogenic and leaf tissues
From: Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro
| Â | SE_5D | SE_10D | SE_15D | WT_L |
|---|---|---|---|---|
Total number of QC-passed reads | 73882504 | 212208700 | 139910622 | 179025732 |
Total Number of mapped reads | 75839181 | 222139250 | 148769022 | 183167937 |
Mapped percentage (%) | 97.82 | 98.18 | 97.24 | 99.10 |
Read −1* | 37996562 | 111267307 | 74522675 | 91775211 |
Read −2* | 37842619 | 110871943 | 74246347 | 91392726 |
Total number of unmapped reads | 1613269 | 3862501 | 2560237 | 1613269 |
Un-mapped percentage (%) | 2.18 | 1.82 | 2.76 | 0.90 |