Table 5 Important TF genes that were more highly expressed in somatic embryos as compared to leaf tissues, ranked in order of TF family
From: Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro
Gene ID | Gene short name | TF family | Description |
|---|---|---|---|
AT3G26790 | FUS3 | ABI3VP1 | Regulator of gene expression during late embryogenesis |
AT1G28300 | LEC2 | ABI3VP1 | |
AT3G24650 | ABI3 | ABI3VP1 | Essential for seed maturation and a central regulator in ABA signalling |
AT4G37750 | ANT | AP2-EREBP | Required for control of cell proliferation |
AT5G57390 | AIL5 | AP2-EREBP | Essential for the developmental transition between the embryonic and vegetative phases |
AT5G17430 | BBM | AP2-EREBP | Similar to AINTEGUMENTA expressed in embryos |
AT5G64750 | ABR1 | AP2-EREBP | Involved in ABA signalling |
AT4G11140 | CRF1 | AP2-EREBP | Members of ERF subfamily; cytokinin response factors function redundantly to regulate the development of embryos, cotyledons and leaves |
AT1G68550 | CRF10 | AP2-EREBP | |
AT3G25890 | CRF11 | AP2-EREBP | |
AT4G23750 | CRF2 | AP2-EREBP | |
AT5G53290 | CRF3 | AP2-EREBP | |
AT4G27950 | CRF4 | AP2-EREBP | |
AT2G46310 | CRF5 | AP2-EREBP | |
AT3G20840 | PLT1 | AP2-EREBP | A key effector for establishment of the stem cell niche during embryonic pattern formation |
AT1G51190 | PLT2 | AP2-EREBP | |
AT1G19850 | MP | ARF | TF (IAA24) mediating embryo axis formation and vascular development |
AT2G41070 | EEL | bZIP | Homologous to ABI5; Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo |
AT2G36270 | ABI5 | bZIP | Regulates a subset of LEA genes; involved in ABA signalling during seed maturation and germination |
AT3G54810 | GATA8 | C2C2-Gata | Expressed in the embryo axis and involved in germination |
AT3G50870 | GATA18 | C2C2-Gata | A transcriptional regulator required to position the proembryo boundary in the early embryo |
AT5G07500 | PEI1 | C2H2 | An embryo-specific zinc finger TF required for heart-stage embryo formation |
AT5G47670 | L1L | CCAAT-HAP3 | A regulator of embryo development |
AT1G62360 | STM | HOMEOBOX | Required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant |
AT5G13790 | AGL15 | MADS | Preferentially expressed during embryogenesis and key regulator of embryogenesis |
AT5G53950 | CUC2 | NAC | With CUC1 redundantly required for embryonic apical meristem formation and cotyledon separation |
AT3G15170 | CUC1 | NAC | Involved in shoot apical meristem formation and auxin-mediated lateral root formation |
AT1G66600 | ABO3 | WRKY | Involved in ABA signalling |