Table 2 Coverage of four Cryptosporidium hominis genomes sequenced in this study and sequence similarities to published C. parvum (IOWA) and C. hominis (TU502) genomes
Chromosome | C. parvum length (bp) | 37999 (IbA10G2) | 30976 (IaA28R4) | 30974 (IbA10G2) | 33537 (IaA28R4) | TU502 (IaA25R3) | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Contigs mapped | Length (bp) | Coverage (%) | Similarity to IOWA (%) | Similarity to TU502 (%) | Contigs mapped | Length (bp) | Coverage (%) | Similarity to IOWA (%) | Similarity to TU502 (%) | Contigs mapped | Length (bp) | Coverage (%) | Similarity to IOWA (%) | Similarity to TU502 (%) | Contigs mapped | Length (bp) | Coverage (%) | Similarity to IOWA (%) | Similarity to TU502 (%) | Contigs mapped | Length (bp) | Coverage (%) | Similarity to IOWA (%) | ||
1 | 875659 | 15 | 867575 | 99.08 | 96.8 | 99.79 | 1 | 873289 | 99.73 | 96.81 | 99.86 | 36 | 863586 | 98.62 | 96.84 | 99.82 | 54 | 840604 | 96 | 96.93 | 99.86 | 124 | 859754 | 98.18 | 96.88 |
2 | 985969 | 7 | 987017 | 100.11 | 96.79 | 99.58 | 8 | 983830 | 99.78 | 96.82 | 99.81 | 41 | 970191 | 98.4 | 96.81 | 99.77 | 69 | 944487 | 95.8 | 96.9 | 99.82 | 115 | 946071 | 95.95 | 96.73 |
3 | 1099352 | 13 | 1098355 | 99.91 | 96.89 | 99.62 | 13 | 1096430 | 99.73 | 96.86 | 99.79 | 40 | 1081251 | 98.35 | 96.86 | 99.75 | 87 | 1064015 | 96.78 | 96.98 | 99.81 | 158 | 1079381 | 98.18 | 96.78 |
4 | 1104417 | 3 | 1103687 | 99.93 | 96.76 | 99.72 | 4 | 1105075 | 100.06 | 96.76 | 99.8 | 86 | 1056974 | 95.7 | 96.81 | 99.74 | 123 | 1024384 | 92.75 | 96.93 | 99.82 | 195 | 1007110 | 91.19 | 96.77 |
5 | 1080900 | 13 | 1092751 | 101.1 | 96.78 | 99.74 | 11 | 1107822 | 102.49 | 96.78 | 99.84 | 71 | 1013283 | 93.74 | 96.93 | 99.77 | 118 | 940540 | 87.01 | 97.09 | 99.83 | 186 | 972978 | 90.02 | 96.79 |
6 | 1332857 | 5 | 1304591 | 97.88 | 96.91 | 99.76 | 2 | 1298888 | 97.45 | 96.93 | 99.86 | 66 | 1263267 | 94.78 | 97.01 | 99.76 | 124 | 1237394 | 92.84 | 97.09 | 99.83 | 192 | 1240122 | 93.04 | 96.82 |
7 | 1278458 | 5 | 1268482 | 99.22 | 97.19 | 99.79 | 4 | 1269257 | 99.28 | 97.2 | 99.87 | 27 | 1267106 | 99.11 | 97.18 | 99.82 | 79 | 1258429 | 98.43 | 97.25 | 99.88 | 124 | 1282777 | 100.34 | 97.18 |
8 | 1344712 | 3 | 1319172 | 98.1 | 96.78 | 99.76 | 2 | 1319721 | 98.14 | 96.8 | 99.83 | 57 | 1300516 | 96.71 | 96.81 | 99.78 | 113 | 1281066 | 95.26 | 96.9 | 99.81 | 175 | 1304075 | 96.98 | 96.74 |
Total | 9102324 | 64 | 9041990 | 99.34 | 96.86 | 99.72 | 45 | 9054312 | 99.47 | 96.87 | 99.83 | 424 | 8816174 | 96.93 | 96.9 | 99.78 | 767 | 8590919 | 94.36 | 97 | 99.83 | 1269 | 8692268 | 95.49 | 96.84 |