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Table 2 Comparative summary statistics of the MinION® and corresponding NaS reads

From: Genome assembly using Nanopore-guided long and error-free DNA reads

  

1D reads

2D reads

MinION® reads

   

aligned using LAST

# reads

57,911

8,581

 

# reads (>10Kb)

3,609

3,866

 

Cumulative size (Mbp)

118.9

86.1

 

Average size (bp)

2,052

10,033

 

N50 size (bp)

11,058

12,141

 

Max size (bp)

123,135

58,704

 

Aligned reads

9,623 (16.6%)

7,140 (83.2%)

 

Mean identity percent

56.6%

74.5%

 

Max alignment size

54,158

58,656

 

Error-free reads

0

0

NaS reads aligned using BWA mem

# reads

4,717

6,558

 

# reads (>10Kb)

167

3,045

 

Cumulative size (Mbp)

17.2

65.6

 

Average size (bp)

3,639

10,008

 

N50 size (bp)

4,273

12,685

 

Max size (bp)

31,283

59,863

 

Aligned reads

4,717 (100%)

6,558 (100%)

 

Mean identity percent

99.9937%

99,9893%

 

Max alignment size

31,283

59,863

 

Error-free reads

4,620 (97.9%)

6,307 (96.2%)