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Table 3 Comparative statistics of assemblies generated from subsets of NaS or Illumina reads

From: Genome assembly using Nanopore-guided long and error-free DNA reads

  Assembly 1 Assembly 2 Assembly 3 Illumina_only assembly
MinION® coverage 14.4x 28.6x 57.0x NA
Illumina 50x @250 bp 50x @250 bp 50x @250 bp 50x @250 bp
NaS coverage 5.3x 10.6x 23.0x NA
# of scaffolds 19 5 1 20
Cumulative size (Mbp) 3,431,926 3,599,306 3,600,135 3,592,537
Average size (bp) 180,628 719,861 3,600,135 179,627
N50 size (bp) 242,347 1,815,485 3,600,135 326,117
L50 4 1 1 5
N90 size (bp) 83,428 421,811 3,600,135 140,386
L90 14 3 1 11
Max size (bp) 755,415 1,815,485 3,600,135 520,993
Genome fraction (%) 92.855 99.551 99.880 99.735
# misassemblies 4 2 1 4
# mismatches per 100 kbp 6.46 4.97 4.67 6.49
# indels per 100 kbp 4.64 3.27 3.20 0.33