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Table 2 D. noxia De novo genome assembly statistics

From: The genome of Diuraphis noxia, a global aphid pest of small grains

 

D. noxia WGS

D. noxia RNA-seq

Number of Contigs

49,379(≥1000 bp)

85,990 (≥200 bp)

Number of Scaffolds

5,641

NA

Total Contig Length

293,543,926

99,888,423

Total Scaffold Length

393,024,634

NA

Contig N 50

12,578

2,863

Scaffold N 50

397,774

NA

Largest Contig (bp)

147,337

32,914

Largest Scaffold (bp)

2,142,037

NA

GC/AT percentage

29.06% GC/70.94% AT

32.8% GC/67.2% AT

CEGMA genes (complete/partial)

86.3%/94.4%

99.6%/99.6%

  1. De novo genome assembly performed by Allpaths-LG, de novo transcriptome assembly performed by Trinity.