The genome of Diuraphis noxia, a global aphid pest of small grains

BMC Genomics

Table 3 Summary of transposable and repetitive elements in the D. noxia genome

Element type		Number of elements	Length occupied	Percentage of genome ^A	Percentage of genome ^B
SINEs		10,729	2,578,098	0.65	0.87
	ALUs	0	0	0	0
	MIRs	1	58	0	0
LINEs		8,415	1,047,278	0.27	0.35
	LINE1	623	33,258	0.01	0.01
	LINE2	2,705	206,618	0.05	0.07
	L3/CR1	695	95,452	0.02	0.03
LTR elements		6,338	1,319,571	0.33	0.44
	ERVL	61	3,546	0	0
	ERV_classI	443	24,913	0.01	0.01
	ERV_classII	359	17,479	0	0
DNA elements		71,820	12,373,070	3.13	4.17
	hAT-Charlie	3,564	466,416	0.12	0.16
	TcMar-Tigger	139	15,935	0	0
Unclassified:		70,950	14,872,045	3.76	5.02
Total Interspersed Repeats		NA	32,190,062	8.14	10.85
Small RNA		256	19,670	0	0.01
Satellites		628	48,648	0.01	0.02
Simple repeats:		246,285	11,528,041	2.92	3.89
Low complexity:		31,355	1,595,105	0.40	0.54
Total:			45,381,526	11.47	15.31

^APercentage of total genome, including N-containing scaffold gaps, occupied by the indicated transposable and repeat elements. ^BPercentage of total genome, excluding N-containing scaffold gaps, occupied by the indicated transposable and repeat elements.

ISSN: 1471-2164