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Table 1 Statistic analysis of Cavendish and Dajiao reads mapped to M. acuminate reference genome

From: Comparative transcriptomics analysis reveals difference of key gene expression between banana and plantain in response to cold stress

Sample name

Cavendish ( Musa spp. Cavendish; AAA group)

Dajiao ( Musa spp. Dajiao; ABB group)

 

10°C

10°C

10°C

10°C

10°C

10°C

 

0 h replicates

3 h replicates

6 h replicates

0 h replicates

3 h replicates

6 h replicates

Total reads a

16.96 ± 0.93

14.54 ± 0.03

12.66 ± 1.41

13.94 ± 1.51

15.03 ± 2.03

16.20 ± 0.33

Total mapped

10.30 ± 0.78

8.57 ± 0.18

7.59 ± 0.79

8.62 ± 0.93

9.27 ± 1.16

9.10 ± 0.13

 

(60.70 ± 1.24%)

(58.94 ± 1.34%)

(59.98 ± 0.47%)

(61.86 ± 0.01%)

(61.75 ± 0.59%)

(56.20 ± 0.31%)

Multiple mapped

2.75 ± 0.06

3.12 ± 0.37

2.45 ± 0.09

3.20 ± 0.32

4.23 ± 0.82

3.17 ± 1.19

 

(16.22 ± 0.52%)

(21.44 ± 2.50%)

(19.46 ± 1.50%)

(23.31 ± 4.79%)

(28.02 ± 1.65%)

(19.67 ± 7.75%)

Uniquely mapped

7.55 ± 0.71

5.45 ± 0.55

5.14 ± 0.70

5.43 ± 1.25

5.04 ± 0.35

5.94 ± 1.32

 

(44.48 ± 1.76%)

(37.51 ± 3.84%)

(40.53 ± 1.02%)

(38.55 ± 4.80%)

(33.74 ± 2.23%)

(36.54 ± 7.44%)

Reads map to ‘+’

1.83 ± 0.22

1.33 ± 0.11

1.18 ± 0.07

1.25 ± 0.18

1.24 ± 0.10

1.46 ± 0.20

 

(10.75 ± 0.70%)

(9.17 ± 0.76%)

(9.34 ± 0.52%)

(8.94 ± 0.32%)

(8.33 ± 0.46%)

(9.02 ± 1.04%)

Reads map to ‘-’

5.73 ± 0.49

4.12 ± 0.44

3.97 ± 0.64

4.18 ± 1.07

3.79 ± 0.25

4.47 ± 1.12

 

(33.7 ± 1.06%)

(28.34 ± 3.08%)

(31.19 ± 1.54%)

(29.61 ± 4.47%)

(25.41 ± 1.78%)

(27.52 ± 6.40%)

Non-splice reads

7.10 ± 0.64

5.16 ± 0.52

4.92 ± 0.67

5.19 ± 1.17

4.83 ± 0.32

5.62 ± 1.13

 

(41.79 ± 1.50%)

(35.51 ± 3.65%)

(38.79 ± 0.99%)

(36.86 ± 4.41%)

(32.37 ± 2.23%)

(34.59 ± 6.30%)

Splice reads

0.46 ± 0.07

0.29 ± 0.027

0.22 ± 0.029

0.24 ± 0.08

0.21 ± 0.03

0.32 ± 0.19

 

(2.69 ± 0.27%)

(2.00 ± 0.18%)

(1.75 ± 0.029%)

(1.69 ± 0.39%)

(1.38 ± 0.00%)

(1.95 ± 1.13%)

  1. aTotal reads: clean data obtained after filtering the reads containing adapter, poly-N and low quality reads from raw data.
  2. (Unit: Million reads).