Table 1 Top 20 regulated protein coding genes in the RFP fraction
Upregulated | |||
|---|---|---|---|
Annotation | Feature ID | log2FC(MT/E) | FDR |
hypothetical protein | TcCLB.510323.60 | 11.93 | 5.55E-37 |
trans-sialidase putative | TcCLB.435601.10 | 11.10 | 3.43E-27 |
hypothetical protein conserved | TcCLB.506859.230 | 10.79 | 1.04E-32 |
hypothetical protein | TcCLB.509007.50 | 10.47 | 2.09E-32 |
receptor-type adenylate cyclase putative | TcCLB.428999.20 | 10.43 | 4.90E-09 |
trans-sialidase Group II putative | TcCLB.511585.230 | 10.42 | 1.04E-32 |
mucin-associated surface protein MASP putative | TcCLB.507957.320 | 10.38 | 1.05E-13 |
hypothetical protein | TcCLB.509433.10 | 10.02 | 3.30E-29 |
cyclin putative | TcCLB.509455.140 | 10.01 | 1.05E-25 |
DNA polymerase delta subunit 2 putative | TcCLB.509455.70 | 9.88 | 1.46E-29 |
hypothetical protein | TcCLB.507859.46 | 9.62 | 2.14E-08 |
hypothetical protein conserved | TcCLB.511545.170 | 9.61 | 1.75E-28 |
mucin-associated surface protein MASP putative | TcCLB.506599.100 | 9.58 | 2.06E-25 |
engulfment and cell motility domain 2 putative | TcCLB.509599.164 | 9.55 | 4.42E-11 |
hypothetical protein conserved | TcCLB.509769.20 | 9.26 | 9.15E-27 |
trans-sialidase putative | TcCLB.505363.19 | 9.13 | 9.80E-20 |
ATP-dependent DEAD/H RNA helicase putative | TcCLB.506777.10 | 9.07 | 2.26E-06 |
amino acid permease putative | TcCLB.509167.40 | 8.94 | 1.03E-25 |
protein kinase putative casein kinase I putative | TcCLB.510247.20 | 8.88 | 2.78E-23 |
phosphatidylinositol 3-kinase catalytic subunit putative | TcCLB.511709.19 | 8.86 | 1.63E-25 |
Downregulated | |||
Annotation | Feature ID | log2FC(MT/E) | FDR |
40S ribosomal protein S33 putative | TcCLB.506413.30 | NA | 4.72E-09 |
hypothetical protein conserved | TcCLB.506659.35 | NA | 8.80E-06 |
hypothetical protein conserved | TcCLB.508207.54 | NA | 4.59E-03 |
hypothetical protein conserved | TcCLB.509599.120 | NA | 7.19E-04 |
hypothetical protein conserved | TcCLB.511527.82 | NA | 2.25E-02 |
anti-silencing protein ASF 1 putative | TcCLB.511417.100 | NA | 2.15E-03 |
hypothetical protein conserved | TcCLB.510515.120 | NA | 1.34E-02 |
hypothetical protein conserved | TcCLB.507611.50 | NA | 5.81E-03 |
hypothetical protein conserved | TcCLB.511529.50 | NA | 1.44E-03 |
RNA polymerase I | TcCLB.504041.4 | NA | 5.55E-03 |
hypothetical protein | TcCLB.504449.40 | NA | 1.16E-02 |
hypothetical protein | TcCLB.508277.310 | NA | 3.51E-02 |
hypothetical protein conserved | TcCLB.507631.10 | NA | 4.28E-02 |
60S ribosomal protein L37a putative | TcCLB.511145.46 | −7.37 | 1.26E-04 |
kinetoplast-associated protein 3 KAP3 | TcCLB.511529.80 | −7.36 | 1.20E-12 |
nucleoside phosphorylase putative | TcCLB.506865.2 | −7.10 | 2.16E-12 |
hypothetical protein conserved | TcCLB.511189.84 | −6.86 | 2.50E-05 |
MP44 putative | TcCLB.506925.390 | −6.85 | 1.55E-04 |
hypothetical protein conserved | TcCLB.511751.166 | −6.83 | 1.10E-03 |
hypothetical protein conserved | TcCLB.510289.99 | −6.81 | 1.85E-04 |