| |
# overlapping CHIP seq peaks
|
# of overlapping CHIP seq peaks in cases with significant sequence conservation
|
# of overlapping CHIP seq peaks in cases with conservation of expression in A. lyrata
|
|---|
TAIR data set | 209 ¶ | 81 | 87 |
Matsui2008 | 2916 ¶ | 999 †† | 1014 † |
Okamoto2010 | 1060 ¶ | 377 ††† | 313 |
- * Counts are for individual non-identical CHIP-seq peaks. Significance of enrichment of CHIP-seq peaks using hypergeometric probability:
- †, P = 0.02 (non-significant if a HB correction is applied, see Table 3), †† P = 0.001, ††† P < 0.0001.
- ¶ These total numbers of CHIP-seq peaks are highly significantly enriched compared to randomly sampled near-gene DNA (P < 0.00001, normal statistics). To assess this, for each of the three actual data sets listed, 500 samples of near-gene DNA of the same distribution of sizes and position relative to neighbour genes as the actual set were generated (as described in the
Methods
).
