Name of Database | Function | Method | Parameters | Citation |
---|---|---|---|---|
Blast2GO | Protein homology annotation | BLASTP | e-value < 10-3 | [122] |
Pfam | Conserved domain annotation | HMM | e-value ≤ 1e-3 | [123] |
CAZYmes Analysis Toolkit (CAT) | CAZyme family annotation | BLASTP | Default | [128] |
antiSMASH | Secondary metabolite clusters | HMM | Default (Eukaryotic) | [64] |
fPoxDB | Fungal peroxidase family annotation | HMM | e-value ≤ 1e-5 | [56] |
SignalP 4.1 | Presence and location of signal peptide cleavage sites | Neural network | Default (Eukaryotic) | [64] |
The Cytochrome P450 Homepage | Cytochrome P450 monooxygenase family annotation | BLASTP | e-value ≤ 1e-5 | [129] |
Transporter Classification Database | Classification of Membrane Transport Proteins | BLASTP | e-value ≤ 1e-5 | [130] |
Pathogen-Host Interaction (PHI) database | Experimentally tested genes for pathogen-host interaction | BLASTP | e-value ≤ 1e-5 | [46] |