CMRegNet–An interspecies reference database for corynebacterial and mycobacterial regulatory networks

BMC Genomics

Table 1 This table summarizes the database content of CMRegNet

Organism	Genes	Reg	TG	TFBS	CG	MT	Both	NRs
C. aurimucosum ATCC 700975	2531	31	448	420	294	264	108	666
C. diphtheriae NCTC 13129	2272	37	379	470	270	68	210	548
C. efficiens YS-314	2950	44	601	537	443	262	248	953
C. glutamicum ATCC 13032	3058	94	723	452	1314	0	0	1314
C. glutamicum R	3052	51	724	773	638	282	312	1232
C. jeikeium K411	2104	25	418	440	212	156	223	591
C. kroppenstedtii DSM 44385	2018	24	399	321	199	114	279	591
C. pseudotuberculosis 1002	2057	31	408	339	285	91	239	615
C. pseudotuberculosis C231	2053	29	409	338	281	93	234	608
C. pseudotuberculosis FRC41	2110	30	437	355	303	93	250	646
C. urealyticum DSM 7109	2024	25	377	356	176	132	262	570
M. abscessus	4920	45	1374	1855	198	2156	541	2895
M. avium 104	5120	40	1489	2358	101	2676	467	3244
M. bovis BCG str. Pasteur 1173P2	3948	53	2195	4117	115	5209	407	5731
M. leprae Br4923	1604	17	450	335	107	326	208	641
M. marinum M	5423	44	1919	3805	121	4190	742	5053
M. smegmatis str. MC2 155	6717	50	1555	2299	266	2366	614	3246
M. tuberculosis F11	3941	52	1934	3988	106	4852	294	5252
M. tuberculosis H37Ra	4034	54	2380	4391	142	5654	498	6294
M. tuberculosis H37Rv	4003	40	1458	2466	0	2466	0	2466

Legend: Genes = total number of genes; Reg = total number of regulatory genes; TG = number of target genes; TFBS = total number of binding sites; CG = number of regulations exclusively transferred from Corynebacterium glutamicum ATCC 13032; MT = number of regulations exclusively transferred from Mycobacterium tuberculosis H37Rv; Both = regulations predicted by both model organisms; NRs = total number of regulations

ISSN: 1471-2164