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Fig. 6 | BMC Genomics

Fig. 6

From: Unravelling the genome of Holy basil: an “incomparable” “elixir of life” of traditional Indian medicine

Fig. 6

Abundance of phenylpropanoid, mevalonate and non- mevalonate pathway genes as per the annotation of predicted genes against all Viridiplantae clade genes in Uniprot. [Abbreviations used- Alcohol dehydrogenase (ADH); Polyphenol oxidase (PPO); Flavonoid O-methyltransferase (FOMT); Cinnamate 4-hydroxylase (C4H); Cinnamyl alcohol dehydrogenase (CAD); Cinnamoyl-CoA reductase (CCR); Hydroxyphenylpyruvate reductase (HPPR); 4-Coumarate:coenzyme A ligase (4CL); Anthocyanidin 3-O-glucoside 5-O-glucosyltransferase (PF3R4); Chalcone synthase (CHS); Tyrosine aminotransferase (TAT); Hydroxycinnamoyl transferase (HSHCT); Rosmarinic acid synthase (RAS); Phenylalanine ammonia-lyase (PAL); Dihydroflavonol 4-reductase (DFR); Flavonoid 3’ 5’-hydroxylase (F3’5’H); UDP-glucose: flavonoid 7-O-glucosyltransferase (UFGT); Eugenol synthase 1 (EGS); p-Coumaroyl shikimate 3’-hydroxylase (CS3’H); p-Coumarate 3-hydroxylase (C3H); Alcohol acyltransferase (AAT2); Caffeoyl CoA O-methyltransferase (CCOMT); Chalcone isomerase (CHI); Ferulate 5-hydroxylase (F5H); Arogenate dehydrogenase (ADH); Chavicol O-methyltransferase (CVOMT); Prephenate aminotransferase (PAT); Chorismate mutase (CM); Dehydroquinate dehydratase/ shikimate dehydrogenase (DHQ-SDH); Anthocyanidin synthase (ANS); Cinnamate/p-coumarate carboxyl methyltransferase (CCMT); Caffeic acid 3-O-methyltransferase (COMT); 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHPS); Flavanone 3-hydroxylase (F3H); Flavonoid 3’-hydroxylase (F3’H); Glutathione S-transferase (GST); 4-Hydroxyphenylpyruvate dioxygenase (HPPD); Chorismate synthase (CS); Eugenol O-methyltransferase (EOMT); Benzoate carboxyl methyltransferase (BAMT); Arogenate dehydratase (ADT); 3-dehydroquinate synthase (DHQS); Copalyl diphosphate synthase(CPS); Bicyclogermacrene synthase (Ov-TPS4); Sesquiterpene synthase (SesquiTPS); 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGR); (R)-limonene synthase (LS); Terpene synthase (TPS); Geraniol synthase (GES); Gamma-cadinene synthase (CDS); Secologanin synthase (SLS); Selinene synthase (SES); Multifunctional triterpene synthase (Multifunc triTPS); (+)-menthofuran synthase (MFS); Ent-kaurene synthase (KS); Lupeol synthase(LUP); Nerolidol/linalool synthase (NES/LIS-1); Alpha-zingiberene synthase (ZIS); Germacrene D synthase (GDS); 3-hydroxy-3-methylglutaryl coenzyme A synthase(HMGS); Mevalonate kinase (MVK); Mevalonate diphosphate decarboxylase (MDC); Farnesyl diphosphate synthase(FPPS); Squalene synthase (SQS); Beta-amyrin synthase (bAS); Mixed amyrin synthase (AS); 5-epi-aristolochene synthase (EAS); Beta-myrcene synthase (MYS); Cis-muuroladiene synthase (MxpSS1); Monoterpene synthases (MTPS); Cineole synthase (CinS2); Terpinolene synthase (TES); Valencene synthase (ValCS); 5-phosphomevalonate kinase (PMK); (-)-endo-fenchol synthase (FES); (+)-epi-alpha-bisabolol synthase (LdTPS8); Tricyclene synthase 0e23 /(E)-beta-ocimene synthase 0e23/ Terpenoid synthase 0e23) (Terpenoid synthase); Geranyl diphosphate synthase (GPPS); 1-deoxy-D-xylulose 5-phosphate synthase (DXS); 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR); Geranylgeranyl diphosphate synthase (GGPPS); Isopentenyl diphosphate isomerise (IDI); 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR); 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (MCT); 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK); 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPP); 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS)]

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