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Fig. 5 | BMC Genomics

Fig. 5

From: Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes

Fig. 5

Map of scaffold 2. The first (outermost) circle represents the gene density of scaffold 2. The red indicates gene number higher than 8 in that 20 kb fragment, the blue indicates gene number from 6 to 8 in that 20 kb fragment, and the grey indicates gene number below 6 in that 20 kb fragment. The second circle represents scaffold size, and the smallest unit represents 10 kb. The third circle represents all genes in scaffold 2. CAZyme genes are indicated in red. The discrete black boxes describe the density of CAZyme genes. The next three circles indicate the genes which expression differs significantly in xylan, rice straw or cellulose, from outside to inside, respectively, when compared to sucrose as a control condition. Up-regulated genes are red, and down-regulated genes are green. The innermost three circles are gene expression graphs in cellulose, rice straw and xylan relatively to sucrose, from outside to inside, respectively. A red background indicates log2 (ratio of RPM values) ≥ 2, and a green background indicates log2 (ratio of RPM values) ≤ -2). Scaffold 2 has a CAZyme gene cluster that spans the bases 2300-2370 kb in which all genes were up-regulated relatively to sucrose in the 3 treatments

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