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Table 3 Expanded or depleted PFAM domains in Microbotryum lychnidis-dioicae

From: Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

PFAM domain

M. lychnis-dioicae

S. roseus

R. glutinis

M. osmundae

M. larici-populina

P. graminis-tritici

S. reilianum

U. maydis

M. globosa

Agaricomycetesc (7)

Basidiomycete comparisona

Pucciniales comparisonb

p-value

q-value

p-value

q-value

PF00067.15 Cytochrome P450

10

7

5

14

29

17

15

20

6

95

1.43E-11

6.49E-08

1.28E-02

1

PF05729.5 NACHT

1

2

1

1

1

1

1

1

0

44

6.20E-08

1.41E-04

4.51E-01

1

PF01697.20 Glycosyltransferase family 92

5

1

0

1

0

0

0

0

0

0

1.65E-05

2.50E-02

1.99E-02

1

PF06280.5 Fn3-like (DUF1034)

10

0

0

0

5

9

1

1

0

1

2.54E-05

2.88E-02

1.00E + 00

1

PF00646.26 F-box

7

18

12

12

9

11

11

10

3

43

5.20E-05

4.33E-02

2.72E-02

1

PF03583.7 Secretory lipase

7

0

0

0

0

0

3

2

6

0

5.72E-05

4.33E-02

1.76E-03

3.07E-01

PF00734.11 CBM1 Fungal cellulose binding

0

0

3

0

0

0

0

0

0

21

1.21E-04

7.10E-02

6.60E-02

1

PF02816.11 Alpha kinase

0

0

0

0

79

39

0

0

0

5

1.25E-04

7.10E-02

2.80E-27

1.27E-23

PF07690.9 MFS1 Major Facilitator Superfamily

119

110

26

64

90

72

104

98

30

129

4.11E-02

1

2.06E-08

4.67E-05

PF01753.11 zf-MYND finger

7

11

26

3

7

4

2

2

1

41

4.61E-04

2.33E-01

5.16E-08

7.82E-05

PF01083.15 Cutinase

0

0

1

4

21

9

3

4

0

2

7.90E-02

1

6.49E-07

5.89E-04

PF01670.9 Glycosyl hydrolase family 12

0

0

0

10

14

3

0

0

0

1

1.70E-01

1

1.08E-06

6.56E-04

PF11327.1 DUF3129

0

0

0

4

13

10

0

0

0

1

2.62E-01

1

1.08E-06

6.56E-04

PF00097.18 Zinc finger, C3HC4 type

23

11

9

26

22

93

28

24

12

24

6.82E-01

1

1.16E-06

6.56E-04

PF00080.13 Copper/zinc superoxide dismutase

0

0

0

2

6

18

0

0

0

1

2.62E-01

1

1.94E-06

9.79E-04

PF00098.16 Zinc knuckle

10

6

1

6

11

59

8

7

5

11

7.63E-01

1

6.31E-06

2.87E-03

PF06609.6 Fungal trichothecene efflux pump

16

16

5

6

6

3

8

9

2

12

4.10E-02

1

1.18E-05

4.86E-03

PF12013.1 DUF3505

0

0

0

1

4

16

0

10

0

0

2.65E-01

1

2.15E-05

8.14E-03

PF03101.8 FAR1 DNA-binding domain

0

0

0

1

14

4

1

1

0

1

4.09E-01

1

6.65E-05

2.32E-02

PF00083.17 Sugar (and other) transporter

54

56

13

31

46

34

56

46

14

61

3.28E-01

1

1.71E-04

5.54E-02

PF07738.6 Sad1/UNC-like

2

1

2

3

24

7

2

1

2

2

5.87E-01

1

2.45E-04

7.42E-02

  1. aM. lychnis-dioicae compared to all other Basidomycetes; b Microbotryales (M. lychnis-dioicae, S. roseus, R. glutinis) compared to other Pucciniales (M. larici-populina, P. graminis tritici, M. osmundae); cAgaricomycetes represent average of the 7 species in this group; see Additional file 11 for counts per species