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Table 2 Number of DE genes (p and q < 0.05) as determined by two different statistical programs (Cuffdiff and NBPSeq)

From: RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection

 

Cuffdiff

NBPSeq

Number of DE genes identified by both methods

Number of DE genes with |log2(FC)| > 2

PR_PVYO_4h

506

321

268

14

PR_ PVYO _10h

455

154

139

7

RB_ PVYO _4h

1326

542

489

60

RB_ PVYO _10h

819

182

156

30

PR_PVYNTN_4h

518

287

245

31

PR_ PVYNTN _10h

791

593

488

27