Table 3 Number of annotated transcripts and open reading frames (identified by TransDecoder) using different annotation methods and sequence databases
Input | Annotation method | Number of annotated transcripts |
|---|---|---|
All transcripts | BLASTx – NCBI nr protein | 62,804 (29.6 %) |
All transcripts | BLASTn – C.maenas EST | 19,891 (9.4 %) |
All transcripts | BLAST2GO | 8,091 (3.8Â %) |
All transcripts | TransDecoder ORF finder | 58,383 (27.5Â %) |
All transcripts | KEGG | 30,352 (14.3Â %) |
Open reading frames | BLASTp – UniProt/SwissProt | 41,108 (70.4 %) |
Open reading frames | Pfam | 37,776 (67.4Â %) |
Open reading frames | SignalP | 4,132 (1.9Â %) |
Open reading frames | TmHMM | 0 (0.0Â %) |