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Table 4 Identification, sequence similarity and Gene Ontology annotation statistics of peptide sequences in the transcriptome

From: De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

Description

 

Number of sequences

Percentage of sequences (%)

Transcripts

 

212,427

 

TransDecoder peptides

 

58,383

 

Peptides with Swissprot/Uniprot annotation

 

41,108

70.41

GO annotated transcripts

 

53,766

25.31

GO annotated peptides

 

19,423

47.23

GO tree

GO

Count

%

Cellular Component

cytoplasm

2,122

10.9

 

nucleus

1,955

10.1

 

plasma membrane

1,272

6.6

 

membrane

1,213

6.3

 

cytosol

1,195

6.2

Molecular Function

protein binding

2,577

13.3

 

binding

1,071

5.5

 

ATP binding

755

3.9

 

metal ion binding

569

2.9

 

protein homodimerization activity

485

2.5

Biological Process

cellular process

597

3.1

 

regulation of cellular process

539

2.8

 

primary metabolic process

446

2.3

 

response to stimulus

419

2.2

 

transport

416

2.1

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BMC Genomics

ISSN: 1471-2164

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