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Table 1 Details of 37 ABC transporter genes and the translated proteins identified in lampreys

From: Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey

Gene name

Sea lamprey (SL)

Japanese lamprey (JL)

Concatenation of SL and JL

Referenceb (aa)

Acc. No.

mRNA (bp)

Protein (aa)

CDS statusa

mRNA (bp)

Protein (aa)

CDS status

mRNA (bp)

Protein (aa)

Domain structure

CDS status

ABCA1a

KM232912

4371

1457

P

6588

2195

C

6786

2276

(TMD-NBD)2

C

2261

ABCA1b

KM232913

609

203

P

4416

1471

P

4416

1471

TMD-NBD-TMD

P

2261

ABCA2

KM232914

4614

1537

P

7053

2350

C

7521

2457

(TMD-NBD)2

C

2433

ABCA3

KM232915

7248

1725

C

4455

1484

C

7248

1725

(TMD-NBD)2

C

1704

ABCA4

KM232916

3180

1059

P

6348

2116

C

6348

2116

(TMD-NBD)2

C

2310

ABCA5

KM232917

5366

1679

C

3762

1253

P

5366

1679

(TMD-NBD)2

C

1642

ABCA12

KM232918

6737

1832

P

5492

1829

P

6737

1832

(TMD-NBD)2

P

2595

ABCB1

KM232919

4585

1288

C

3750

1249

C

4585

1288

(TMD-NBD)2

C

1276

ABCB1-like

KM232920

2256

751

P

3018

1005

P

3132

1043

TMD-?-TMD-NBD

P

1276

ABCB5

-

-

-

-

3570

1189

C

3570

1336

(TMD-NBD)2

C

1255

ABCB6

KM232921

4180

857

C

2382

793

C

4180

857

TMD-NBD

C

842

ABCB7

KM232922

2241

729

C

-

-

-

2242

729

TMD-NBD

C

752

ABCB8

KM232923

2371

709

C

2118

705

C

2371

709

TMD-NBD

C

717

ABCB9

KM232924

3063

807

C

2385

795

C

3063

807

TMD-NBD

C

762

ABCB10

KM232925

3635

754

C

2265

754

C

3635

754

TMD-NBD

C

715

ABCB10-like

KM232926

2370

790

C

2259

752

C

2370

790

TMD-NBD

C

715

ABCB11

KM232927

5241

1320

C

2853

950

P

5241

1320

(TMD-NBD)2

C

1321

ABCC1

KM232928

1484

444

P

4044

1347

P

4658

1501

(TMD-NBD)2

C

1528

ABCC2

KM232929

7002

1558

C

4034

1344

P

7002

1558

(TMD-NBD)2

C

1543

ABCC3a

KM232930

5876

1556

C

4260

1419

P

5876

1556

(TMD-NBD)2

C

1522

ABCC3b

KM232931

3500

1166

P

2859

952

P

3502

1166

(TMD-NBD)2

P

1522

ABCC4

KM232932

4176

1303

C

2070

689

P

4176

1303

(TMD-NBD)2

C

1325

ABCC5

KM232933

3093

1009

P

4236

1411

C

4383

1439

(TMD-NBD)2

C

1436

ABCC7

KM232934

4606

1466

C

3180

1059

P

4606

1466

(TMD-NBD)2

C

1476

ABCC8

KM232935

4737

1578

C

4311

1436

P

4737

1578

(TMD-NBD)2

C

1588

ABCC9

KM232936

4850

1596

C

4383

1460

P

4850

1596

(TMD-NBD)2

C

1588

ABCC10

KM232937

5922

1584

C

4710

1569

C

5922

1584

(TMD-NBD)2

C

1460

ABCD2

KM232938

2954

791

C

2379

792

C

2954

791

TMD-NBD

C

741

ABCD3

KM232939

1990

659

C

1980

659

C

1990

659

TMD-NBD

C

659

ABCD4

KM232940

2033

633

C

1902

633

C

2033

633

TMD-NBD

C

606

ABCE1

KM232941

2386

599

C

1800

599

C

2386

599

NBD-NBD

C

599

ABCF1

KM232942

2773

740

C

2508

835

C

3037

828

NBD-NBD

C

837

ABCF2

KM232943

5349

614

C

1845

614

C

5349

614

NBD-NBD

C

628

ABCF3

KM232944

3774

712

C

2022

673

C

3774

712

NBD-NBD

C

709

ABCG2a

KM232945

2790

703

C

2100

699

C

2790

703

NBD-TMD

C

657

ABCG2b

KM232946

2521

666

C

1737

578

C

2521

666

NBD-TMD

C

657

ABCG4

KM232947

1977

658

C

1959

652

C

1977

658

NBD-TMD

C

646

  1. aP indicates partial sequence, C indicates complete sequence. bReference indicates the length of the protein in mouse
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BMC Genomics

ISSN: 1471-2164

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