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Table 1 Features and source materials for the 11 Oryza species and Leersia perrieri. Approximately 1.5× of single-end raw Illumina reads was used for de novo repeat library construction and assembled sequences were used to detect full-length elements. Two independent RE libraries were developed for each of the two O. sativa subspecies. The genome assembly of O. officinalis was not available for the full-length element characterization

From: RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

Species

Genome Type

Est. Genome Size

Illumina Reads

Assembled Genome

Mb

Ref.a

Avg. Read Length (bp)

# of Reads (M)

Source

Statusb

Size(Mb)

Source

O. sativa. ssp. japonica

AA

389

1

97

6.5

R. Wing – Unpubl.

chr

373.2

http://rice.plantbiology.msu.edu

O. rufipogon

AA

439

3

98

6.8

SRA ERR120613

chr

338.0

EMBL-EBI PRJEB4137

O. sativa. ssp. indica

AA

466

2

100

7.0

R. Wing – Unpubl.

chr

374.5

http://rise2.genomics.org.cn

O. nivara

AA

448

3

79

8.7

Y. Hsing – Unpubl.

chr

337.9

NCBI AWHD00000000

O. glaberrima

AA

357

4

75

7.2

R. Wing – Unpubl.

chr

285.0

NCBI ADWL00000000

O. barhii

AA

411

5

116

5.0

R. Wing – Unpubl.

chr

308.3

NCBI ABRL00000000

O. glumipatula

AA

464

5

101

6.9

R. Wing – Unpubl.

chr

372.9

NCBI ALNU02000000

O. longistaminata

AA

352

5

75

8.0

W. Wang – Unpubl.

scf

344.6

W. Wang – Unpubl.

O. meridionalis

AA

435

5

99

5.9

R. Wing – Unpubl.

chr

335.7

NCBI ALNW00000000

O. punctata

BB

425

3

97

6.6

R. Wing – Unpubl.

chr

393.8

NCBI AVCL00000000

O. officinalis

CC

651

3

107

9.6

N. Kurata – Unpubl.

-

-

-

O. brachyantha

FF

362

3

100

5.5

SRA SRR350707

chr

260.8

NCBI AGAT01000000

Leersia perrieri

-

323

6

100

4.9

R. Wing – Unpubl.

chr

266.7

NCBI ALNV00000000

  1. aReferences: a: [10]; b: [29]; c: [30]; d: [31]; e: [32]; f: Arunuganathan K. pers. comm
  2. bStatus: chr: chromosome pseudomolecules; scf: scaffolds