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Fig. 4 | BMC Genomics

Fig. 4

From: Transcriptional analysis of phloem-associated cells of potato

Fig. 4

Distribution of molecular functions in the abundant transcripts in phloem associated cells. The reads of all the genes identified in petiole-PAC or stem-PAC were normalized with upper quantile normalization. A mean value is calculated from the three replicates. Genes with more than 500 reads in the mean value of either petiole-PAC and stem-PAC were regarded as abundantly expressed genes. GO terms of the whole genome were analyzed with Blast2GO. The GO categories identified for each gene were made comparable by converting each GO term to the same level in the hierarchy to permit clustering into GOslim categories. This was done with goslimviewer using AgBase software [96] (http://agbase.msstate.edu/cgi-bin/tools/goslimviewer_select.pl)

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