Table 7 Transcription factors with RNA-binding protein motifs in their downstream sequences
From: Transcriptional analysis of phloem-associated cells of potato
Gene ID | Motif | Annotation | Pet phloem | Stem phloem | LD. mean | SD. mean | ||
|---|---|---|---|---|---|---|---|---|
PGSC0003DMG400002392 | PTB | Â | Â | Auxin_response_factor_7 | 309 | 212 | 954 | 1209 |
PGSC0003DMG400003771 | PTB | Â | Â | Auxin_response_factor_5 | 11 | 149 | 282 | 437 |
PGSC0003DMG400008065 | PTB | Â | Â | Auxin_response_factor_4 | 910 | 835 | 2160 | 2426 |
PGSC0003DMG400009773 | PTB | Â | Â | Auxin_response_factor_19 | 540 | 1364 | 2414 | 2546 |
PGSC0003DMG400014179 | PTB | PUM | Â | Auxin_response_factor_2 | 1805 | 2124 | 4654 | 5835 |
PGSC0003DMG400014452 | Â | Â | NOVA | Auxin_response_factor_2 | 966 | 346 | 1795 | 1904 |
PGSC0003DMG400015919 | PTB | Â | Â | ARF8 | 826 | 600 | 4562 | 4915 |
PGSC0003DMG400020711 | Â | PUM | Â | Auxin_response_factor_1 | 750 | 822 | 3921 | 3179 |
PGSC0003DMG400023345 | PTB | Â | Â | ARF_domain_class_transcription_factor | 500 | 206 | 806 | 637 |
PGSC0003DMG401018664 | PTB | Â | Â | Auxin_response_factor_8-1 | 557 | 508 | 4626 | 3659 |
PGSC0003DMG400000118 | PTB | Â | Â | StlAA15 (AtARF9) | 2638 | 2838 | 2945 | 3706 |
PGSC0003DMG400002608 | Â | Â | NOVA | StlAA14 (AtlAA18/28) | 926 | 1325 | 2393 | 693 |
PGSC0003DMG400005327 | PTB | Â | Â | StlAAlO (AtlAA16) | 710 | 549 | 958 | 1483 |
PGSC0003DMG400006093 | PTB | Â | Â | StlAA24 (AtlAA14) | 413 | 178 | 6503 | 11,614 |
PGSC0003DMG400013445 | PTB | PUM | Â | StlAA12 (AtlAA3) | 0 | 61 | 21 | 20 |
PGSC0003DMG400020139 | PTB | PUM | Â | StlAA2 (AtlAAl) | 11 | 23 | 382 | 469 |
PGSC0003DMG400029339 | PTB | Â | Â | StlAA5 (AHAA13) | 4 | 125 | 36 | 46 |
PGSC0003DMG402019457 | PTB | Â | Â | Auxin_indole-3-acetic_acid_3(AtlAA16) | 534 | 537 | 6031 | 5908 |
PGSC0003DMG400019635 | PTB | Â | Â | BEL11 | 92 | 85 | 4043 | 5214 |
PGSC0003DMG400010086 | PTB | Â | Â | BEL13 | 1 | 162 | 520 | 389 |
PGSC0003DMG400012329 | PTB | Â | Â | BEL14 | 0 | 0 | 84 | 83 |
PGSC0003DMG400021323 | PTB | Â | Â | BEL29 | 1282 | 2591 | 4788 | 4997 |
PGSC0003DMG400003750 | PTB | Â | Â | BEL31 | 16 | 9 | 382 | 336 |
PGSC0003DMG400024267 | PTB | PUM | Â | BEL33 | 464 | 812 | 1072 | 1100 |
PGSC0003DMG400008057 | PTB | PUM | Â | BEL34 | 199 | 66 | 218 | 399 |
PGSC0003DMG400005930 | PTB | Â | Â | BEL5 | 2089 | 1234 | 3602 | 3375 |
PGSC0003DMG400003751 | Â | PUM | Â | BEL32 | 10 | 47 | 958 | 680 |
PGSC0003DMG400019142 | Â | PUM | Â | BEL35 | 301 | 453 | 528 | 635 |
PGSC0003DMG400029946 | Â | PUM | Â | BEL6 | 5 | 60 | 204 | 282 |
PGSC0003DMG400030961 | Â | Â | Â | BEL30 | 9 | 23 | 770 | 769 |
PGSC0003DMG400022011 | Â | Â | Â | BEL22 | 0 | 84 | 57 | 50 |
PGSC0003DMG400007887 | PTB | PUM | Â | Homeobox_protein_knotted-l-like_LET12 | 12 | 13 | 84 | 53 |
PGSC0003DMG400030737 | PTB | Â | Â | Homeobox_protein_knotted-l-like_LET12 | 1132 | 2984 | 3147 | 3270 |
PGSC0003DMG400004953 | PTB | Â | Â | STH20 | 607 | 726 | 186 | 226 |
PGSC0003DMG400013493 | PTB | Â | Â | POTH1 | 267 | 24 | 77 | 98 |
PGSC0003DMG400016711 | PTB | Â | Â | STH15 (STM) | 4341 | 3154 | 192 | 185 |
PGSC0003DMG400002769 | PTB | PUM | NOVA | STH1 | 55 | 61 | 567 | 499 |
PGSC0003DMG400011891 | PTB | PUM | Â | NAC_domain_protein | 172 | 25 | 1368 | 624 |
PGSC0003DMG400016896 | PTB | Â | Â | NAC_domain_protein | 117 | 266 | 125 | 93 |
PGSC0003DMG400019615 | PTB | Â | Â | NAC_domain_protein | 112 | 30 | 192 | 179 |
PGSC0003DMG400032555 | PTB | Â | Â | NAC_domain_protein | 128 | 4 | 112 | 91 |
PGSC0003DMG400018435 | PTB | PUM | Â | NAC_domain_protein_NAC2 | 202 | 104 | 215 | 99 |
PGSC0003DMG400017567 | PTB | Â | Â | Nam | 461 | 290 | 1067 | 663 |
PGSC0003DMG400028662 | PTB | Â | Â | Nam 2 | 1248 | 1999 | 3026 | 2292 |
PGSC0003DMG400031072 | PTB | Â | Â | Nam 4 | 1998 | 1083 | 1034 | 803 |
PGSC0003DMG400031149 | PTB | Â | Â | Nam 7 | 347 | 442 | 809 | 685 |
PGSC0003DMG401023373 | PTB | Â | Â | Nam 8 | 47 | 101 | 502 | 471 |
PGSC0003DMG400031071 | PTB | PUM | Â | Nam 9 | 925 | 1492 | 1621 | 1761 |
PGSC0003DMG402023373 | PTB | Â | Â | Nam 9 | 395 | 216 | 1428 | 1310 |
PGSC0003DMG400000064 | PTB | Â | Â | WRKY_transcription_factor_23 | 67 | 37 | 98 | 134 |
PGSC0003DMG400000211 | PTB | Â | Â | WRKY_transcription_factor | 520 | 126 | 236 | 164 |
PGSC0003DMG400001434 | PTB | Â | Â | WRKY_transcription_factor-c | 9 | 38 | 224 | 166 |
PGSC0003DMG400005329 | PTB | PUM | Â | WRKY_transcription_factor | 1579 | 946 | 976 | 918 |
PGSC0003DMG400005836 | PTB | Â | Â | WRKY_transcription_factor-30 | 42 | 0 | 13 | 10 |
PGSC0003DMG400009014 | Â | PUM | Â | WRKY_transcription_factor_lle-1 | 157 | 50 | 1416 | 1532 |
PGSC0003DMG400009530 | PTB | Â | Â | WRKY_transcription_factor_3 | 974 | 713 | 580 | 1000 |
PGSC0003DMG400015076 | PTB | PUM | Â | WRKY_transcription_factor | 204 | 44 | 184 | 146 |
PGSC0003DMG400020432 | PTB | Â | Â | WRKY_transcription_factor_5 | 1 | 82 | 98 | 76 |
PGSC0003DMG400022063 | PTB | Â | Â | WRKY1a_transcription_factor | 17 | 0 | 38 | 43 |
PGSC0003DMG400022143 | PTB | Â | Â | WRKY_DNA-binding_protein | 1702 | 1599 | 2386 | 1988 |
PGSC0003DMG400023196 | PTB | Â | Â | WRKY_transcription_factor | 27 | 28 | 1 | 1 |
PGSC0003DMG400028520 | PTB | Â | Â | WRKY_transcription_factor_1 | 3534 | 736 | 774 | 559 |
PGSC0003DMG401031196 | PTB | Â | Â | WRKY_transcription_factor_16 | 571 | 255 | 458 | 186 |
PGSC0003DMG401033880 | PTB | Â | Â | WRKY_transcription_factor_27 | 36 | 79 | 326 | 360 |