Fig. 4
From: ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
ISAba1 detection rate as a function of read depth, for seven A. baumannii GC1 genomes sequenced with Illumina. Mean (lines) and standard deviation (shaded areas) proportions of IS insertions correctly detected per genome, amongst 70 replicate read sets sampled at each depth level (7 read sets x 10 replicates each at read depths 10x, 15x, 20x, 25x, 50x, 75x, 100x). Blue, IS insertion site detected; red, detected with high confidence; purple, detected with low precision (larger than expected gap size between left and right flanking regions, indicated with ‘*’ in output); green, detected with low confidence (high-depth evidence for one side only, low-depth evidence for the other, indicated with ‘?’ in output)