Fig. 6
From: Genomic consequences of selection and genome-wide association mapping in soybean
The visualization of the GWAS results and selection signals for two non-selection traits (pubescence and flower color). a Manhattan plots of MLM for pubescence color. The − log10 P-values from a genome-wide scan are plotted against the position on each of the 20 chromosomes. The horizontal red line indicates the genome-wide significance threshold (FDR < 0.05). b Gene diversity of genomic regions showing strong association signal on Chromosome 6. c XP-CLR and regional GWAS signals near T locus; gene orientation is indicated by the arrow. d Quantile-quantile (QQ) plot of MLM model for pubescence color. e Manhattan plots of MLM for flower color, as in a. f Gene diversity of genomic regions showing strong association signal on Chromosome 13. g XP-CLR and regional GWAS signals near W1 locus; gene orientation is indicated by the arrow. h QQ plot of MLM for flower color