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Fig. 1 | BMC Genomics

Fig. 1

From: Next generation genome sequencing reveals phylogenetic clades with different level of virulence among Salmonella Typhimurium clinical human isolates in Hong Kong

Fig. 1

Maximum-parsimony phylogenetic tree of 47 S. Typhimurium genomes based on SNPs identified by mapping to the LT2 reference genome. Only SNPs in the “core” genes were included. The tree was rooted using Salmonella Enteritidis PT4 (GenBank Accession AM933172) and Salmonella Choleraesuis SC-B67 (GenBank Accession AE017220). Red isolates: local blood isolates; Blue isolates: local stool isolates; Black isolates: reference GenBank isolates. The number on each branch is the number of SNP differences. The scale bar represents the number of SNPs

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BMC Genomics

ISSN: 1471-2164

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