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Table 1 Differentially expressed tRNA derivatives (MDS versus control samples)

From: Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes

tRNA

log2FCa DESeq2

pAdjb DESeq2

log2FC edgeR

pAdj edgeR

pAdj baySeqc

chrM.tRNA10-TC

1.2840

0.0006

2.5347

0.0005

0.0011

chr12.tRNA8-AlaTGC

0.8518

0.0034

1.9498

0.0005

0.0378

chr16.tRNA4-ProAGG

0.8072

0.0274

1.6531

0.0043

0.0089

chr1.tRNA58-LeuCAA

−1.0706

0.0000

−0.7228

0.0406

0.0000

chr19.tRNA8-SeC(e)TCA

−0.6461

0.0103

−0.5944

0.0289

0.0126

chr19.tRNA4-ThrAGT

−0.8098

0.0067

−0.7906

0.0403

0.0489

  1. alog2FC = log 2 fold change
  2. bpAdj = adjusted p -value
  3. cDESeq2, edgeR, and baySeq are the three RNAseq differential expression analysis packages used in this analysis. BaySeq does not generate fold change, thus no fold change from baySeq can be reported