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Table 4 Assembly summary statistics

From: An improved genome reference for the African cichlid, Metriaclima zebra

Assembly

M_zebra_v0

REAPR broken

M_zebra_UMD1

Number of scaffolds

3,750

4,076 (+8.69 %)

3,560 (−5.07 %)

Total size of scaffolds

848,776,495

848,503,369 (−0.03 %)

859,851,869 (+1.3 %)

Longest scaffold

18,958,539

12,137,054 (−35.98 %)

14,997,410 (−20.89 %)

Mean scaffold size

226,340

208,171 (−8.03 %)

241,531 (+6.71 %)

N50 scaffold length

3,699,709

2,783,035 (−24.78 %)

3,158,421 (−14.63 %)

NG50a scaffold length

3,007,690

2,252,862 (−25.10 %)

2,555,048 (−15.05 %)

Scaffold %N

15.93

15.9 (−0.19 %)

6.47 (−59.38 %)

Number of gaps

68,336

68,010 (−0.48 %)

21,436 (−68.63 %)

Non gap bp

713,636,566

713,635,591 (~0.00 %)

804,240,107 (+12.70 %)

Total gap bp

135,139,929

134,867,778 (−0.2 %)

55,611,762 (−58.85 %)

Number of exons mapped

4,490,849

4,490,529 (−0.01 %)

4,589,934 (+2.20 %)

  1. aNG50 assumes genome size of 1.0Gb. Percentage change values in parenthesis are relative to M_zebra_v0