From: An improved genome reference for the African cichlid, Metriaclima zebra
Assembly | M_zebra_v0 | REAPR broken | M_zebra_UMD1 |
---|---|---|---|
Number of scaffolds | 3,750 | 4,076 (+8.69 %) | 3,560 (−5.07 %) |
Total size of scaffolds | 848,776,495 | 848,503,369 (−0.03 %) | 859,851,869 (+1.3 %) |
Longest scaffold | 18,958,539 | 12,137,054 (−35.98 %) | 14,997,410 (−20.89 %) |
Mean scaffold size | 226,340 | 208,171 (−8.03 %) | 241,531 (+6.71 %) |
N50 scaffold length | 3,699,709 | 2,783,035 (−24.78 %) | 3,158,421 (−14.63 %) |
NG50a scaffold length | 3,007,690 | 2,252,862 (−25.10 %) | 2,555,048 (−15.05 %) |
Scaffold %N | 15.93 | 15.9 (−0.19 %) | 6.47 (−59.38 %) |
Number of gaps | 68,336 | 68,010 (−0.48 %) | 21,436 (−68.63 %) |
Non gap bp | 713,636,566 | 713,635,591 (~0.00 %) | 804,240,107 (+12.70 %) |
Total gap bp | 135,139,929 | 134,867,778 (−0.2 %) | 55,611,762 (−58.85 %) |
Number of exons mapped | 4,490,849 | 4,490,529 (−0.01 %) | 4,589,934 (+2.20 %) |