Table 3 Summary of read depth coverage for Petunia axillaris, P. exserta, and P. integrifolia reads mapped to the P. axillaris transcriptome assembly after de-duplication
From: Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.
| Â | Â | Â | Granular Quartile Read Depths | % of Reference Transcriptome with Read Depth Coverage: | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Total reads (millions) | Mean read depth | Third (25Â %) | Median (50Â %) | First (75Â %) | >10 | >15 | >20 | >30 | >40 | >50 |
P. axillaris | 13.35 | 251 | 264 | 93 | 30 | 93.7 | 88.6 | 83.4 | 74.6 | 68.2 | 63.3 |
P. exserta | 11.00 | 207 | 214 | 70 | 16 | 81.2 | 75.8 | 71.5 | 64.9 | 60.0 | 56.1 |
P. integrifolia | 7.65 | 144 | 160 | 49 | 9 | 73.3 | 67.9 | 63.9 | 57.8 | 53.2 | 49.4 |
Total | 32.00 | 355 | Â | Â | Â | Â | Â | Â | Â | Â | Â |