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Table 2 Groupings for cell-type trees on H3K4me3 data

From: A maximum-likelihood approach for building cell-type trees by lifting

 

hESC

Epithelial

Fibroblast

Blood

Astrocytes

Myocytes

Endothelial

Skeletal Muscle

 

(5)

(8)

(16)

(2)

(2)

(1)

(2)

(1)

D

5,0

4,1

6,3

2,0

2,0

1,0

1,1

1,0

P

5,0

4,2

6,4

2,0

1,1

1,0

1,1

1,0

ML

5,0

6,1

15,1

2,0

2,0

1,0

1,1

1,0

  1. Second to ninth columns show the number of cell types (of the same group) belonging to the largest and second-largest clades; the total number of cell types of that group is in the top row. Rows correspond to various methods. Overlap representation is used. ML — maximum-likelihood-based approach, P — parsimony-based approach, D — distance-based approach