From: RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data
Categories | Attributes | Description |
---|---|---|
Read depth | Read depth | Read depth |
Allele segregation | VAF | Variant read ratio |
Allele segregation | SGB | Segregation based metric |
Allele segregation | FQ | Phred probability of all samples |
 |  | being the same |
Allele segregation | CallQual | Variant/reference QUALity |
Mapping quality | PV3 | Mapping quality bias |
Mapping quality | MQB | Mann-Whitney U test of Mapping |
 |  | Quality Bias |
Mapping quality | MQ0F | Fraction of MQ0 reads |
Mapping quality | MQ | Root-mean-square mapping quality |
 |  | of covering reads |
Read position | VDB | Variant Distance Bias for filtering |
 |  | splice-site artefacts in |
 |  | RNA-seq data |
Read position | RPB | Mann-Whitney U test of Read |
 |  | Position Bias |
Read position | PV4 | Tail distance bias |
Base quality | PV2 | Base quality bias |
Base quality | BQB | Mann-Whitney U test of Base |
 |  | Quality Bias |
Read strand | PV1 | Read strand bias |