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Table 2 Significant QTLs* associated with sesame plant height and the seed coat color space

From: Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

QTL

Linkage group

Position (cM)

Flanking bin_marker

Chr_space (kb)

LOD

Additive effect

R2

WC

PY

YL

qPH-3.1

SLG3

80.91

SLG3_bin98-SLG3_bin99

525.3

7.62

−5.17

0.06

qPH-3.2

SLG3

92.41

SLG3_bin114-SLG3_bin115

735.1

20.75

−8.12

0.15

qPH-3.3

SLG3

98.01

SLG3_bin126-SLG3_bin127

928.1

22.44

−8.91

0.18

qPH-4.1

SLG4

34.11

SLG4_bin49-SLG4_bin50

103.0

10.58

5.86

0.08

 

qPH-4.2

SLG4

42.61

SLG4_bin56-SLG4_bin57

908.3

7.16

5.09

0.06

qPH-8.1

SLG8

65.61

SLG8_bin107-SLG8_bin108

33.3

9.41

70.07

0.09

 

qPH-8.2

SLG8

70.51

SLG8_bin111-SLG8_bin112

360.2

29.75

10.18

0.23

qPH-9.1

SLG9

78.81

SLG9_bin102-SLG9_bin103

63.4

12.28

6.33

0.09

 

qPH-9.2

SLG9

84.71

SLG9_bin105-SLG9_bin106

1255.3

12.22

6.56

0.10

qPH-12.1

SLG12

53.01

SLG12_bin66-SLG12_bin67

94.3

3.52

41.35

0.03

qCZL-3.1

SLG3

99.00

SLG3_bin126-SLG3_bin127

928.1

10.43

−4.88

0.09

  

qCZL-4.1

SLG4

34.00

SLG4_bin48-SLG4_bin49

127.4

7.95

4.09

0.07

  

qCZL-4.2

SLG4

48.50

SLG4_bin59-SLG4_bin60

237.1

3.94

32.40

0.04

 

qCZL-8.1

SLG8

71.50

SLG8_bin111-SLG8_bin112

360.2

27.69

7.82

0.24

qCZL-9.1

SLG9

79.60

SLG9_bin103-SLG9_bin104

725.9

7.47

4.00

0.06

 

qCZL-10.1

SLG10

57.60

SLG10_bin104-SLG10_bin105

176.6

2.78

2.39

0.02

  

qCZL-12.1

SLG12

52.20

SLG12_bin65-SLG12_bin66

101.8

3.90

2.83

0.03

qCZL-13.1

SLG13

24.40

SLG13_bin32-SLG13_bin33

110.9

6.65

42.23

0.07

 

qHFC-3.1

SLG3

92.21

SLG3_bin112-SLG3_bin113

324.9

9.99

−34.32

0.09

 

 

qHFC-3.2

SLG3

97.01

SLG3_bin126-SLG3_bin127

928.1

23.26

−3.65

0.22

qHFC-4.1

SLG4

32.41

SLG4_bin45-SLG4_bin46

359.2

6.13

1.75

0.05

qHFC-8.1

SLG8

65.71

SLG8_bin107-SLG8_bin108

33.3

5.59

30.10

0.05

 

qHFC-8.2

SLG8

69.51

SLG8_bin111-SLG8_bin112

360.2

10.91

2.37

0.09

qHFC-9.1

SLG9

78.81

SLG9_bin102-SLG9_bin103

63.4

12.40

2.46

0.10

 

qHFC-9.2

SLG9

84.71

SLG9_bin105-SLG9_bin106

1255.3

12.96

2.58

0.11

  

qHFC-9.3

SLG9

91.01

SLG9_bin112-SLG9_bin113

78.7

12.40

2.48

0.10

 

qIL-3.1

SLG3

41.10

SLG3_bin53-SLG3_bin54

153.7

7.57

0.15

0.07

 

qIL-8.1

SLG8

71.50

SLG8_bin111-SLG8_bin112

360.2

10.52

0.17

0.09

qIL-9.1

SLG9

83.70

SLG9_bin105-SLG9_bin106

1255.3

9.76

0.17

0.10

qIL-12.1

SLG12

53.50

SLG12_bin69-SLG12_bin70

63.2

3.86

1.61

0.04

 

qNN-3.1

SLG3

91.80

SLG3_bin111-SLG3_bin112

193.0

4.62

−0.91

0.05

  

qNN-3.2

SLG3

100.10

SLG3_bin126-SLG3_bin127

928.1

10.15

−1.31

0.10

  

qNN-4.1

SLG4

54.00

SLG4_bin72-SLG4_bin73

466.0

3.96

0.94

0.04

 

qNN-8.1

SLG8

66.50

SLG8_bin110-SLG8_bin111

1154.1

7.99

1.13

0.07

 

qNN-13.1

SLG13

24.40

SLG13_bin32-SLG13_bin33

110.9

8.75

1.42

0.09

 

qTL-2.1

SLG2

66.10

SLG2_bin93-SLG2_bin94

686.3

3.04

4.68

0.03

 

 

qTL-3.1

SLG3

94.40

SLG3_bin124-SLG3_bin125

75.7

7.90

−7.68

0.08

 

 

qTL-3.2

SLG3

103.60

SLG3_bin131-SLG3_bin132

83.2

7.38

−6.58

0.08

  

qTL-4.1

SLG4

74.10

SLG4_bin93-SLG4_bin94

169.7

3.04

0.36

0.03

  

qTL-5.1

SLG5

35.60

SLG5_bin58-SLG5_bin59

71.1

3.19

−4.24

0.03

  

qTL-13.1

SLG13

8.80

SLG13_bin22-SLG13_bin23

1362.3

2.67

−0.35

0.03

 

qSCa-4.1

SLG4

50.90

SLG4_bin63-SLG4_bin64

199.9

15.41

0.84

0.13

 

qSCa-8.1

SLG8

73.40

SLG8_bin114-SLG8_bin115

2518.0

26.73

1.18

0.25

 

qSCa-8.2

SLG8

62.60

SLG8_bin105-SLG8_bin106

575.8

9.02

0.69

0.09

 

 

qSCb-4.1

SLG4

50.90

SLG4_bin63-SLG4_bin64

199.9

54.75

4.81

0.39

 

qSCb-8.1

SLG8

72.40

SLG8_bin114-SLG8_bin115

2518.0

27.08

3.11

0.21

 

qSCb-11.1

SLG11

0.00

SLG11_bin1-SLG11_bin2

367.8

5.56

1.38

0.03

 

qSCl-4.1

SLG4

50.90

SLG4_bin63-SLG4_bin64

199.9

30.34

5.62

0.21

 

qSCl-8.1

SLG8

73.40

SLG8_bin114-SLG8_bin115

2518.0

44.06

7.14

0.46

 

qSCl-11.1

SLG11

0.00

SLG11_bin1-SLG11_bin2

367.8

20.76

4.64

0.14

 
  1. * Traits related to plant height including capsule zone length (CZL), height of the first capsule-bearing node (HFC), internode length (IL), node number (NN), and tip length without the capsule (TL) are also listed. “Flanking bin_marker” indicates the bin_markers flanking the related QTL; “Chr_space” indicates the distance between the flanking bin_markers on the sesame chromosome; “Additive effect” indicates the estimated value for the genotype transmitted stably to offspring; “R2” indicates the contribution rate of the locus to the phenotype; Check marks in the last three columns indicate that the QTL was detected at a specific trial site; WC, Wuchang field trial location; PY, Pingyu field trial location; YL, Yangluo field trial location