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Table 1 Categorization of differentially expressed transcription factors in cluster 5, cluster 8 and cluster 10

From: Transcriptome analysis of secondary cell wall development in Medicago truncatula

Category

Occurrence

P-value*

MYB

30

0.921

b-ZIP

28

0.014

NAC

24

0.004

WRKY

24

0.06

C2H2 (ZF)

21

0.115

AP2/EREBP

20

0.687

HB

19

0.122

bHLH

17

0.869

C2C2 (ZF)

8

0.97

HSF

8

0.13

C3H (ZF)

6

0.901

MADS

6

0.949

AUX/IAA

5

0.186

CCAAT-binding

5

0.727

Scarecrow

5

-

RING (ZF)

4

-

ARF

3

0.994

SPF1

3

-

AOPBP

2

-

E2F

2

0.194

GARP

2

0.989

SREBP

2

-

BES1/BZR1

1

0.374

DELLA

1

-

DnaJ protein

1

-

EIL protein

1

0.69

GT-1

1

-

LIM

1

0.374

LOB

1

-

Phaseolin G-box binding

1

-

PHD (ZF)

1

0.999

TCP

1

-

TFIIIB

1

-

TGACG-BP

1

-

Trihelix

1

0.209

Others

34

 
  1. *A total of 291 putative transcription factor genes from cluster 5, 8, and 10 were categorized based on functional domains. The distribution as frequencies of occurrence was presented in column 2. *P values were calculated in hypergeometric distribution analysis as the following: The proportion of transcription factors of a given class was compared with the proportion of that class in the whole set of transcription factors. AOPBP, ascorbate oxidase promoter-binding protein. SREBP, sucrose-responsive element binding factor. The classification of the transcription factors can be found at http://mtgea.noble.org/