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Table 3 Twenty-eight previously unanchored scaffolds for which there were markers in either the Williams 82 × PI479752 (WP) or the Essex × Williams 82 (EW) map, or both, to define their genome position

From: Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

SNP ID

Scaffold

Physical Position of SNP in the scaffold

LG based on WP population

Position based on WP population (cM)

LG_based on EW population

Position based on EW population (cM)

Total scaffold length

BARC_1.01_scaffold_1036_3469_T_C

scaffold_1036

3469

8

117.851

  

5173

BARC_1.01_scaffold_1448_1683_A_C

scaffold_1448

1683

17

80.252

  

3995

BARC_1.01_scaffold_1448_67_G_A

scaffold_1448

67

17

80.252

   

BARC_1.01_scaffold_1454_1730_G_A

scaffold_1454

1730

1

  

87.464

3982

BARC_1.01_scaffold_1484_809_T_C

scaffold_1484

809

10

57.485

  

4368

BARC_1.01_scaffold_1605_1791_T_C

scaffold_1605

1791

9

82.196

9

80.192

3584

BARC_1.01_scaffold_169_21520_G_A

scaffold_169

21520

11

90.373

  

25752

BARC_1.01_scaffold_169_9083_G_T

scaffold_169

9083

11

90.373

   

BARC_1.01_scaffold_2048_399_C_A

scaffold_2048

399

16

  

69.671

1779

BARC_1.01_scaffold_2182_1012_T_C

scaffold_2182

1012

13

92.688

13

134.477

1349

BARC_1.01_scaffold_22_540761_G_A

scaffold_22

540761

8

  

120.532

1088050

BARC_1.01_scaffold_22_985719_G_A

scaffold_22

985719

8

  

120.532

 

BARC_1.01_scaffold_2280_754_G_A

scaffold_2280

754

18

  

69.307

1018

BARC_1.01_scaffold_23_881897_T_C

scaffold_23

881897

1

46.789

  

939397

BARC_1.01_scaffold_24_197620_T_C

scaffold_24

197620

10

  

52.909

634454

BARC_1.01_scaffold_245_10767_A_G

scaffold_245

10767

11

87.989

  

17525

BARC_1.01_scaffold_248_8179_A_G

scaffold_248

8179

7

12.253

  

17311

BARC_1.01_scaffold_303_12268_T_G

scaffold_303

12268

3

28.82

  

17325

BARC_1.01_scaffold_317_4132_A_G

scaffold_317

4132

9

101.035

  

14271

BARC_1.01_scaffold_36_219042_G_A

scaffold_36

219042

2

75.178

2

97.615

280716

BARC_1.01_scaffold_469_2885_C_T

scaffold_469

2885

1

  

55.543

10200

BARC_1.01_scaffold_476_2115_T_C

scaffold_476

2115

9

57.081

9

48.989

10120

BARC_1.01_scaffold_476_9307_A_C

scaffold_476

9307

9

57.118

9

49.034

 

BARC_1.01_scaffold_48_40550_T_C

scaffold_48

40550

9

134.091

  

139886

BARC_1.01_scaffold_554_3651_G_A

scaffold_554

3651

16

  

99.322

9124

BARC_1.01_scaffold_66_159931_A_G

scaffold_66

159931

9

60.405

9

54.911

170827

BARC_1.01_scaffold_732_107_A_G

scaffold_732

107

18

63.953

  

6997

BARC_1.01_scaffold_825_3928_G_T

scaffold_825

3928

2

75.353

  

6293

BARC_1.01_scaffold_84_64248_T_C

scaffold_84

64248

10

52.937

  

69299

BARC_1.01_scaffold_91_31407_G_A

scaffold_91

31407

9

58.919

9

51.365

63120

BARC_1.01_scaffold_938_1798_A_G

scaffold_938

1798

15

83.907

15

102.19

6175

BARC_1.01_scaffold_97_54858_G_A

scaffold_97

54858

9

58.919

  

57671

Total length of newly anchored scaffolds

      

3609761