Skip to main content

Table 2 The Acropora millepora repertoire of caspases.

From: Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora

Name

Transcript ID

Best blast hit (20 Feb 2015)

e-value

PFAM domains

Assignment

AmCaspase A

Cluster010971

XP_008272146.1 Caspase-3 isoform X1 [Oryctolagus cuniculus]

9e-51

Peptidase_C14

Caspase 3 / 6

Cluster011013

Cluster000366

Cluster000353

AmCaspase B

Cluster025634

XP_006020988.1 Caspase-2 isoform X2 [Alligator sinensis]

1e-12

Peptidase_C14

Caspase 1, 4, 5, 12

AmCaspase C

No corresponding transcript cluster could be found

EKC21562.1 Caspase-8 [Crassostrea gigas]

1e-35

Peptidase_C14

Caspase X-related

AmCaspase D

Cluster003711p

XP_005972660.1 Caspase-3 [Pantholops hodgsonii]

2e-35

Peptidase_C14

Caspase 3 / 6

Cluster004256p

Cluster004864p

AmCaspase E

Cluster020870

ACH97121.1 Caspase 3-like protein [Stylophora pistillata]

4e-110

Peptidase_C14

Caspases 3, 6, 7

AmCaspase F

Cluster001637m

XP_002734388.1 Caspase-8-like isoform X1 [Saccoglossus kowalevskii]

7e-43

Peptidase_C14

Caspase X-related

AmCaspase Xa

Cluster019376

AFN02464.1 Caspase-8 [Ciona intestinalis]

4e-40

2 x Peptidase_C14

Caspase X

AmCaspase Xb

Cluster006548

ACH96579.1 Caspase-8-like cysteine peptidase [Leucoraja erinacea]

1e-40

2 x Peptidase_C14

Caspase X

AmCaspase Xc

Cluster004392

XP_009805143.1 Caspase-7 [Gavia stellata]

2e-34

2 x Peptidase_C14

Caspase X

AmCaspase Xd

Cluster007407

AFN02464.1 Caspase-8 [Ciona intestinalis]

2e-34

2 x Peptidase_C14

Caspase X

AmCaspase 8

Cluster002669p

AJG36593.1 Caspase 8 [Acropora millepora]

0

Peptidase_C14 2 x DED

Caspase 8

AmCaspase CARDa

Cluster012253

ACM46824.1 Caspase 3/9 [Patiria pectinifera]

1e-60

CARD Peptidase_C14

Caspase 9

AmCaspase CARDb

Cluster012758

ACH97121.1 Caspase 3-like protein [Stylophora pistillata]

7e-149

CARD Peptidase_C14

Caspases 9

Cluster018373

Cluster005190

AmCaspase CARDc

Cluster010805

ACM46824.1 Caspase 3/9 [Patiria pectinifera]

1e-65

CARD Peptidase_C14

Caspase 1, 4, 5, 12

  1. A combination of HMM and BlastP analyses was used on the A. millepora transcriptome and genome and led to the identification of 14 members of the caspase family. Assignment (right hand column) is based on phylogenetic analysis of caspase domains (Fig. 6)