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Table 3 Top SNPs from GEMMA mixed model analysis of Sequenom genotyping data in the validation cohort

From: Identification and validation of risk loci for osteochondrosis in standardbreds

Chr

bp

P-value likelihood ratio test

Annotation

14

18198820

1.41E-03

Nonsynonymous exon 9 GABRA6

3

107352236

1.57E-03

Nonsynonymous exon 20 PROM1

1

140205123

1.89E-03

Nonsynonymous exon 20 ATP8B4

1

139685697

2.82E-03

Nonsynonymous exon 32 TRPM7

14

16830511

5.34E-03

Intron HMMR

14

16840478

8.05E-03

Intron NUDCD2

4

5924012

9.70E-03

Nonsynonymous exon 4 ATXN7L1

21

48664783

1.13E-02

Intron CTNND2

10

57209370

1.83E-02

Downstream PDSS2

5

77536297

1.89E-02

Nonsynonymous exon 8 CLCA2

5

78709303

2.27E-02

Nonsynonymous exon 4 WDR63

1

139944477

4.16E-02

Nonsynonymous exon 10 SLC27A2

10

56817838

4.47E-02

Intron QRSL1

14

37281732

4.93E-02

Downstrream SPATA24

  1. Chr chromosome, bp base pair