Table 4 Overlapping Genomic islands predicted by IslandViewer 3 methods
by IslandPath-DIMOB | by SIGI-HMM | Proteins | ||||||
|---|---|---|---|---|---|---|---|---|
GI number | Start | End | Size (nucleotides) | GI number | Start | End | Size (nucleotides) | |
2 | 1,691,609 | 1,760,539 | 68,930 | 19 | 1,691,609 | 1,722,457 | 30,848 | Biodegradation pathways |
21 | 1,734,079 | 1,761,611 | 27,532 | Biodegradation pathways (includes similar region 5) | ||||
22 | 1,878,882 | 1,891,309 | 12,427 | Phage proteins (integrases) | ||||
4 | 2,001,817 | 2,012,061 | 10,244 | 24 | 2,000,239 | 2,009,439 | 9200 | Uncharacterized proteins |
5 | 3,066,560 | 3,103,335 | 36,775 | 31 | 3,063,300 | 3,079,834 | 16,534 | Uncharacterized, heavy metal pumps, phage related and conjugal transfer of plasmids |
32 | 3,093,114 | 3,102,991 | 9877 | |||||
6 | 3,109,158 | 3,161,042 | 51,884 | 33 | 3,107,612 | 3,127,918 | 20,306 | |
34 | 3,128,726 | 3,138,976 | 10,250 | |||||
35 | 3,141,481 | 3,162,313 | 20,832 | |||||