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Table 4 aDifferentially expressed genes with fold change ≥2 in mammary gland of cows fed 5 % linseed oil

From: Transcriptome adaptation of the bovine mammary gland to diets rich in unsaturated fatty acids shows greater impact of linseed oil over safflower oil on gene expression and metabolic pathways

 

bLSO day+7 compared with day-14

LSO day+28 compared with day+7

LSO day+28 compared with day-14

Gene

cFC

log2FC

P-value

FDR

P-value

FC

log2FC

P-value

FDR

P-value

FC

log2FC

P-value

FDR

P-value

ASB11

−3.091

−1.628

1.3E-10

4.9E-07

2.102

1.072

2.2E-05

0.0039

2.102

1.072

2.2E-05

0.0039

DMGDH

−2.157

−1.109

0.0037

0.0930

4.359

2.124

6.0E-08

9.6E-05

4.359

2.124

6.0E-08

9.6E-05

ENSBTAG00000034372

−2.477

−1.309

8.4E-06

0.0026

2.000

0.987

0.0007

0.0361

1.982

0.987

0.0007

0.0361

FBP2

3.298

1.721

0.0026

0.0785

3.343

1.741

0.0005

0.0312

3.343

1.741

0.0005

0.0312

ESRP2

−2.000

−0.998

0.0001

0.0139

2.316

1.212

3.2E-06

0.0011

2.316

1.212

3.2E-06

0.0011

FRMPD3

2.198

1.136

4.0E-07

0.0003

−2.550

−1.351

1.8E-09

1.7E-05

−2.550

−1.351

1.8E-09

1.7E-05

IGSF9B

3.032

1.600

0.0010

0.0479

−2.708

−1.437

0.0031

0.0857

−2.708

−1.437

0.0031

0.0857

LTF

−2.452

−1.294

1.8E-05

0.0043

2.039

1.028

0.0005

0.0316

2.039

1.028

0.0005

0.0316

SMTNL2

−2.000

−0.969

9.0E-05

0.0128

2.151

1.105

6.1E-06

0.0015

2.151

1.105

6.1E-06

0.0014

RAB17

−2.537

−1.343

0.0005

0.0346

2.311

1.209

0.0017

0.0614

2.311

1.209

0.0017

0.0614

ALDH1L2

-

-

-

-

2.325

1.217

5.6E-06

0.0014

2.325

1.217

5.6E-06

0.0014

ANGPTL4

-

-

-

-

2.834

1.503

2.2E-06

0.0009

2.834

1.503

2.2E-06

0.0009

BEST3

-

-

-

-

−2.908

−1.540

3.1E-05

0.0052

−2.908

−1.540

3.1E-05

0.0052

BSP30C

-

-

-

-

−2.370

−1.245

5.3E-06

0.0014

−2.370

−1.245

5.3E-06

0.0014

C28H10ORF10

-

-

-

-

2.131

1.092

1.3E-06

0.0007

2.131

1.0917

1.3E-06

0.0007

CENPJ

-

-

-

-

−2.000

−1.000

0.0002

0.0142

−2.000

−1.000

0.0002

0.0142

CLSTN3

-

-

-

-

2.092

1.065

0.0012

0.0518

2.092

1.065

0.0012

0.0518

CYP2B6

-

-

-

-

3.123

1.643

7.8E-08

9.6E-05

3.123

1.643

7.8E-08

9.6E-05

ENSBTAG00000014220

-

-

-

-

2.355

1.236

9.2E-06

0.0020

2.355

1.236

9.2E-06

0.0020

ENSBTAG00000045737

-

-

-

-

3.366

1.751

0.0016

0.0598

3.366

1.751

0.0016

0.0598

FCAMR

-

-

-

-

2.081

1.057

0.0003

0.0219

2.081

1.057

0.0003

0.0219

IGFBP2

-

-

-

-

2.155

1.108

0.0019

0.0655

2.155

1.108

0.0019

0.0655

KRT18

-

-

-

-

2.083

1.059

5.6E-06

0.0014

2.083

1.059

5.6E-06

0.0014

NXPE2

-

-

-

-

−2.349

−1.232

0.0004

0.0280

−2.349

−1.232

0.0004

0.0280

RNASE1

-

-

-

-

2.021

1.015

0.0024

0.0736

2.021

1.015

0.0024

0.0735

SCN5A

-

-

-

-

−2.124

−1.087

0.0002

0.0171

−2.124

−1.087

0.0002

0.0171

SESN2

-

-

-

-

2.637

1.399

4.3E-07

0.0003

2.637

1.399

4.3E-07

0.0004

STMN1

-

-

-

-

2.064

1.046

2.1E-06

0.0009

2.064

1.046

2.1E-06

0.0009

TIEG2

-

-

-

-

2.015

1.011

2.8E-07

0.0003

2.015

1.011

2.8E-07

0.0003

TMEM132E

-

-

-

-

−2.951

−1.561

7.1E-05

0.0082

−2.951

−1.561

7.1E-05

0.0082

TRIB3

-

-

-

-

2.564

1.358

3.8E-07

0.0003

2.564

1.358

3.8E-07

0.0004

UCP2

-

-

-

-

3.153

1.657

7.2E-08

9.6E-05

3.153

1.657

7.2E-08

9.6E-05

ARG2

-

-

-

-

−1.951

−0.964

0.0002

0.0155

-

-

-

-

CALB1

2.240

1.164

0.0002

0.0170

-

-

-

-

-

-

-

-

CDH16

−2.818

−1.494

3.0E-15

3.4E-11

-

-

-

-

-

-

-

-

CDO1

−2.345

−1.230

5.3E-08

7.3E-05

-

-

-

-

-

-

-

-

CFB

−2.170

−1.118

0.0004

0.0326

-

-

-

-

-

-

-

-

CFI

−2.454

−1.295

0.0022

0.0737

-

-

-

-

-

-

-

-

CHI3L1

−4.095

−2.034

0.0009

0.0455

-

-

-

-

-

-

-

-

CYBRD1

−3.310

−1.727

7.4E-06

0.0024

-

-

-

-

-

-

-

-

ENSBTAG00000047368

−2.584

−1.370

0.0006

0.0372

-

-

-

-

-

-

-

-

ENSBTAG00000048058

−2.239

−1.163

3.6E-07

0.0004

-

-

-

-

-

-

-

-

FOS

−2.171

−1.118

2.2E-05

0.0049

-

-

-

-

-

-

-

-

H10ORF10

−2.497

−1.320

4.4E-09

1.0E-05

-

-

-

-

-

-

-

-

ITGB6

−2.296

−1.199

0.0039

0.0954

-

-

-

-

-

-

-

-

KRT15

−4.347

−2.120

5.8E-05

0.0099

-

-

-

-

-

-

-

-

LOXL4

−3.087

−1.626

1.4E-08

2.5E-05

-

-

-

-

-

-

-

-

MLXIPL

−2.125

−1.088

2.0E-06

0.0011

-

-

-

-

-

-

-

-

M-SAA3.2

−5.748

−2.523

9.0E-05

0.0128

-

-

-

-

-

-

-

-

PRR15L

−2.139

−1.097

0.0004

0.0315

-

-

-

-

-

-

-

-

SAA3

−3.834

−1.939

5.6E-06

0.0023

-

-

-

-

-

-

-

-

SDS

−2.355

−1.236

8.9E-05

0.0128

-

-

-

-

-

-

-

-

  1. aOnly genes with fold change values ≥2.00 are shown. Complete list of differentially expressed genes are shown in Additional file 5a-c. bLSO- linseed oil, day-14 (control period), day+7 (7 days of supplemental feeding with 5 % linseed oil), day+28 (28 days of supplemental feeding with 5 % linseed oil). cFC (Fold change)