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Fig. 3 | BMC Genomics

Fig. 3

From: Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii

Fig. 3

Frequency of transcripts declared differentially expressed (DE) using edgeR robust and DESeq2. Venn diagrams of all transcripts and of low-count transcripts declared DE using edgeR robust (with degrees of freedom specified based on the corresponding estimate obtained using classical edgeR software) and DESeq2 on the complete dataset (i.e. no data filtering) or following data filtering based on a reads-present (RP) criterion or a counts per million (CPM) criterion

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BMC Genomics

ISSN: 1471-2164

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