Gene_ID (see names in Table 9) | DEa | Milk Y | Prot.Y | Fat Y | P% | F% | Evidenceb | Variant type (distance from gene or SIFT prediction) | Variant position (chrom : bp) |
---|---|---|---|---|---|---|---|---|---|
ROBO1 | n | + | + | P | upstream (1823 bp) | 1:26212317 | |||
SLC37A1 | ++ | + | L,D | downstream (4005 bp) | 1:144441230 | ||||
PSMB2 | n | - | - | P,L | missense (SIFT:deleterious) | 3:110752811 | |||
OGDH | n | + | + | P | downstream (4105 bp) | 4:77454411 | |||
MYH9 | n | + | + | P,L | upstream (1635 bp) | 5:75181544 | |||
NCF4 | n | + | - | - | P,L,V | missense (SIFT:tolerated) | 5:75659419 | ||
ARNTL2 | n | - | - | P | upstream (3413 bp) | 5:82942569 | |||
MGST1 | + | + | - | - | P,V,D | upstream (4589 bp) intron | 5:93954751 5:93945655 | ||
CSN2 | ++++ | + | L,V,D | intron | 6:87180731 | ||||
CSN3 | ++++ | - | - | P,L,D | missense (SIFT:tolerated) upstream (2036 bp) | 6:87390576 6:87376362 | |||
GC | n | + | + | - | - | P,L,V | upstream (2582 bp) | 6:88741762 | |
RDH8 | n | - | L | missense (SIFT:deleterious) | 7:15815974 | ||||
TTC7B | + | + | D | downstream (3086 bp) | 10:103182221 | ||||
PROM2 | ++ | - | D | missense (SIFT:tolerated) | 11:2003275 | ||||
PAEP | ++++ | + | + | - | P,L,V,D | missense (SIFT:tolerated) | 11:103303475 | ||
ABO | ++ | + | L,D | downstream (2688 bp) | 11:104229609 | ||||
DGAT1 | n | + | + | - | - | - | P,L,V | intron missense (SIFT:tolerated) | 14:1801116 14:1802266 |
COX6C | n | + | + | P,L | downstream (1091 bp) downstream (3684 bp) | 14:66648812 14:66651404 | |||
TRIM29 | +++ | - | + | P, D | downstream (658 bp) | 15:31212485 | |||
KRT19 | +++ | - | - | P,L,D | missense (SIFT:tolerated) | 19:42366926 | |||
PTRF | + | - | - | P,D | upstream (4742 bp) | 19:43166907 | |||
ERGIC1 | ++ | - | L,D | intron | 20:4543452 | ||||
GHR | + | + | D,V | downstream (4947 bp) | 20:31885789 | ||||
SMEK1 | n | + | + | - | P,V | downstream (2777 bp) | 21:56798101 | ||
WARS | + | - | - | P,L,D | intron | 21:66916247 | |||
MLH1 | n | - | L,V | synonymous | 22:10493668 | ||||
GMDS | + | + | D | intron | 23:51280200 | ||||
MARF1 | n | + | + | P | downstream (24 bp) | 25:14138518 | |||
SCD | +++ | + | D | downstream (1134 bp) | 26:21140458 | ||||
PRDX3 | n | - | - | P,L | upstream (3744 bp) | 26:39685136 |