Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

Table 1 A summary of major gene ontology groups demonstrating differential gene expression at the 7d, 28d, and 56d time-points of the multi-stressor condition

Gene ontology category	Total genes found in the transcriptome	7d differentially expressed			28d differentially expressed			56d differentially expressed
Gene ontology category	Total genes found in the transcriptome	Total	Up	Down	Total	Up	Down	Total	Up	Down
Carbohydrate metabolic process	480	61	30	31	2	2	0	9	8	1
Cell death	171	32	20	12	3	1	2	4	1	3
Cell proliferation	155	19	4	15	0	0	0	1	1	0
Homeostatic process	194	20	18	2	2	2	0	9	5	4
Immune system process	246	53	39	14	7	7	0	9	5	4
Lipid metabolic process	409	42	20	22	4	4	0	8	6	2
Response to stress	420	62	48	14	3	3	0	12	7	5

The first column includes the total number of genes found within the transcriptome associated with each GO term, followed by the differential expression data for each time-point of the multi-stressor treatments as compared to the control treatment (sub-divided into total, up- and down-regulated) for each of the GO term categories carbohydrate metabolic process, cell death, cell proliferation, homeostatic process, immune system process, lipid metabolic process, and response to stress. The confidence threshold to determine differential expression was a FDR ≤ 0.05

ISSN: 1471-2164