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Table 1 Enriched biological process gene ontology terms. Analysis of up- and down-regulated genes (p < 0.01) for gene ontology term enrichment

From: Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

Term

FDR

Representation

Up-regulated genes

  

 Proteolysis

5.70E-07

over

 Translation

4.03E-06

under

 Ribosome biogenesis

1.84E-05

under

Down-regulated genes

  

 Ribosome biogenesis

8.93E-21

over

 L-serine metabolic process

1.11E-06

over

 Glycine metabolic process

2.46E-05

over

 tRNA aminoacylation for protein translation

3.29E-05

over

 Lysine biosynthetic process

3.83E-05

over

 Isoleucine biosynthetic process

1.05E-04

over

 Regulation of translational initiation

1.87E-04

over

 Valine biosynthetic process

1.25E-03

over

 Leucine biosynthetic process

1.25E-03

over

 Glyoxylate metabolic process

1.50E-03

over

 Fatty acid β-oxidation

1.50E-03

over

 Cysteine biosynthetic process

9.89E-03

over

 Regulation of transcription, DNA-dependent

7.27E-04

under

 proteolysis

1.34E-03

under

  1. FDR false discovery rate after Fisher’s exact test