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Table 3 Regulatory proteins significantly changing in their phosphorylation state. DNA binding proteins and kinases with a phosphorylation site detected in at least 2/3 biological replicates that significantly changes in abundance after controlling for global protein level (p < 0.05). Best BlastP hits for S. cerevisiae and N. crassa are shown

From: Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

Changing phosphorylation sites

Blast2GO annotation

Change (Log2)

p-value

S. cerevisiae

N. crassa

Gene

Phosphorylated peptide

Gene

Symbol

Gene

Symbol

YALI0D27258g

TSSIAQLSPTFSR

component of the 4 histone acetyltransferase complex

−2.25

0.00

YDR359C

EAF1

NCU07863

vid21

YALI0E16731g

STPIQTSQSPIQTR

YALI0E16731p

−1.11

0.03

-

-

-

-

YALI0D18678g

TRPASFSASSSASYLR

c2h2 transcription factor

−1.08

0.02

YML081W

TDA9

NCU09496

-

YALI0E05489g

GGAVPTFSDSPVRR

and fes cip4 domain protein

−0.68

0.00

YFL047W

RGD2

NCU09537

-

YALI0A19778g

VTGSPLVR

apses transcription

−0.63

0.00

YDL056W

MBP1

NCU07246

div-11

YALI0E18656g

ATTAFSPATAADFNYR

c6 finger domain

1.45

0.00

YDR520C

URC2

NCU01478

-

YALI0F11979g

TVGSPEYGSLLSR

rtg1p

2.08

0.00

YOL067C

RTG1

NCU02724

-

YALI0F00572g

DVSASPVFPK

serine threonine-protein kinase ste20

−1.16

0.00

YHL007C

STE20

NCU03894

stk-4

YALI0D07150g

TSILTTPPPAGR

protein kinase

−0.87

0.00

YKL116C

PRR1

NCU04143

stk-26

YALI0A00506g

ASTSLLSLTR

protein kinase

−0.85

0.03

YBL009W

ALK2

NCU00407

-

YALI0E06519g

APAQPLAPTQAVQSPPR

potential serine threonine-protein kinase hsl1

−0.85

0.00

YKL101W

HSL1

NCU09064

stk-53

YALI0E06519g

SYGSLLGSPVDAR

potential serine threonine-protein kinase hsl1

−0.84

0.00

YKL101W

HSL1

NCU09064

stk-53

YALI0A18590g

QSLITGSQPLPSPLR

serine protein kinase

−0.50

0.01

YMR216C

SKY1

NCU09202

mdk-2

YALI0C16665g

VYTYIQSR

protein kinase

−0.49

0.00

YJL141C

YAK1

NCU07872

prk-2

YALI0D07150g

YFNGNSPPMASISR

protein kinase

−0.45

0.03

YKL116C

PRR1

NCU04143

stk-26

YALI0D08822g

LVSDSQIDR

upstream serine threonine kinase for the snf1 complex

−0.41

0.01

YER129W

SAK1

NCU06177

camk-3

YALI0D20966g

ILVPGEPNVSYICSR

glycogen synthase kinase

0.25

0.02

YMR139W

RIM11

NCU04185

gsk-3

YALI0A10230g

SSITSTFSSSSNAIR

likely protein kinase

0.26

0.03

YNL183C

NPR1

NCU04335

stk-30

YALI0D08822g

SSTITNGILQR

upstream serine threonine kinase for the snf1 complex

0.29

0.00

YER129W

SAK1

NCU06177

camk-3

YALI0E27632g

SIDLLPNIR

calcium calmodulin-dependent protein

0.76

0.00

YOL016C

CMK2

NCU09123

camk-1

YALI0E26609g

LNATPPPLPEPAAVAR

casein kinase i

0.77

0.00

YNL154C

YCK2

NCU04005

ck-1b

YALI0A10230g

STSPVLNLAPHIQPGSGAEK

likely protein kinase

1.06

0.00

YNL183C

NPR1

NCU04335

stk-30

YALI0F27159g

GVDSGAVNFESLR

protein kinase

1.99

0.00

YJL057C

IKS1

NCU08177

stk-51