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Table 3 Content and type of repeats present in SuSy and AS1 BACs from P. glauca and P. pinaster

From: Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing

 

Susy P. glauca

Susy P. pinaster

AS P. glauca

AS P. pinaster

GeneBank:

KC860252

KP172192

KC860234

KP172187

Total length:

137047 bp

59397 bp

130154 bp

46111 bp

GC level:

38.66 %

39.03 %

38.17 %

34.80 %

 

Number of elements/percentage of sequence

Bases masked:

10259 bp (7.49 %)

5173 bp (8.71 %)

7548 bp (5.80 %)

595 bp (1.29 %)

Retroelements

7 (6,78 %)

7 (7,52 %)

9 (4,65 %)

0

LINEs:

0

1 (0,70 %)

2 (0,16 %)

0

L1/CIN4

0

1 (0,70 %)

2 (0,16 %)

0

LTR elements:

7 (6,78 %)

6 (6,82 %)

7 (4,49 %)

0

Ty1/Copia

1 (1,09 %)

1 (0,24 %)

1 (0,55 %)

0

Gypsy/DIRS1

6 (5,60 %)

5 (6,58 %)

6 (3,94 %)

0

DNA transposons

0

0

2 (0,10 %)

0

Simple repeats:

18 (0,67 %)

17 (0,94 %)

18 (0,69 %)

11 (0,98 %)

Low complexity:

1 (0,03 %)

3 (0,25 %)

7 (0,36 %)

2 (0,31 %)