From: Smokescreen: a targeted genotyping array for addiction research
SNPolisher ConversionType | Previously validated markers | Previously failed-validation markers | De novo markers | Total SNPs | Recommendation to keep for analysis |
---|---|---|---|---|---|
PolyHighResolution | 441120 (68.26Â %) | 17595 (2.72Â %) | 7547 (1.17Â %) | 466262 (72.15Â %) | yes |
NoMinorHom | 62639 (9.69Â %) | 6360 (0.98Â %) | 6173 (0.96Â %) | 75172 (11.63Â %) | yes |
MonoHighResolution | 12095 (1.87Â %) | 7061 (1.09Â %) | 28614 (4.43Â %) | 47770 (7.39Â %) | yes if previously validated or de novo |
Other | 6031 (0.93Â %) | 14515 (2.24Â %) | 27537 (4.26Â %) | 48083 (7.44Â %) | no |
CallRateBelowThreshold | 3078 (0.48Â %) | 2856 (0.42Â %) | 1080 (0.17Â %) | 7014 (1.09Â %) | no |
OTV | 370 (0.06Â %) | 535 (0.08Â %) | 860 (0.13Â %) | 1765 (0.27Â %) | yes if off-target variant genotyped |
Hemizygous | 180 (0.03Â %) | 1 (<0.01Â %) | 0 (0.00Â %) | 181 (0.03Â %) | yes if visually inspected |
TOTAL | 525513 (81.32Â %) | 48923 (7.57Â %) | 71811 (11.11Â %) | 646247 | Â |