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Fig. 7 | BMC Genomics

Fig. 7

From: A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution

Fig. 7

Bayesian phylogenetic tree of selected CMV strains. Generalized time reversible (GTR) tree with proportion invariant sites and gamma distribution of multiple sequenced primate CMV strains. Whole genome sequences were aligned using MAFFT with scoring matrix of 200PAM/k = 2 a gap open penalty of 1.53 and offset value of 0.123. New world primates, Owl Monkey (OMCMV) S34E and Squirrel Monkey (SMCMV) SqSHV were used as the out-group to root the tree. RhCMV 68–1, RhCMV 180.92, CyCMV Ottawa, CyCMV Mauritius, Chimpanzee CMV (CCMV) Heberling, Human CMV (HCMV) AD169, Human CMV (HCMV) HAN1, African Green Monkey CMV (GMCMV) Colburn and 2715, and Baboon CMV (BaCMV) OCOM4-37 were compared. Numbers at loci indicate posterior probability with color scaled according to probability; genetic distances measured in substitutions per site (sps) are given by scale below

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