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Table 2 Joint linkage-association analysis of serum uric acid (mg/dl) on chromosome 3

From: GWAS and transcriptional analysis prioritize ITPR1 and CNTN4 for a serum uric acid 3p26 QTL in Mexican Americans

SNPa

Gene

Coordinates NCBI36 (bp)

JLAb (p-value)

MGAc (p-value)

Minor allele/frequency

rs17040820

ITPR1 d

4531694

1.3 × 10−10

9.4 × 10−10

T/0.003

rs7640752

Intergenic

114123136

8.6 × 10−10

1.9 × 10−10

A/0.005

rs11916691

DCP1A e

53350244

9.2 × 10−10

2.0 × 10−10

A/0.005

rs1395388

TGM4 f

44923678

1.8 × 10−8

4.2 × 10−9

G/0.05

rs449361

ARHGEF26 g

155405100

2.8 × 10−8

6.6 × 10−9

T/0.05

rs1014805

CNTN4 h

2310471

7.7 × 10−8

9.1 × 10−4

C/0.33

rs2535632

ITIH4 i

52839315

1.8 × 10−7

4.3 × 10−8

T/0.03

rs9854606

CNTN4

2380442

1.9 × 10−7

2.9 × 10−3

T/0.004

rs1685456

CNTN4

2321860

2.1 × 10−7

1.8 × 10−3

C/0.43

rs1685447

CNTN4

2313137

2.1 × 10−7

3.4 × 10−3

A/0.27

rs1178487

CNTN4

2315743

2.2 × 10−7

3.0 × 10−3

T/0.41

rs17013501

CNTN4

2396201

2.5 × 10−7

5.0 × 10−3

T/0.22

rs6808240

CNTN4

2397321

3.3 × 10−7

8.8 × 10−3

C/0.27

rs1178492

CNTN4

2318040

3.7 × 10−7

7.7 × 10−3

T/0.27

rs1502582

CNTN4

2326831

3.7 × 10−7

6.7 × 10−3

T/0.24

rs1720201

CNTN4

2313231

4.4 × 10−7

1.1 × 10−2

G/0.27

  1. aSNP: Single Nucleotide Polymorphism; bJLA: Joint Linkage Association Analysis; cMGA: Measured Genotype Analysis; d ITPR1: inositol 1,4,5-trisphosphate receptor, type 1; e DCP1A: decapping mRNA 1A; f TGM4: transglutaminase 4; g ARHGEF26: Rho guanine nucleotide exchange factor (GEF) 26; h CNTN4: Contactin 4; i ITIH4: inter-alpha-trypsin inhibitor heavy chain family, member 4